RetrogeneDB ID:
retro_csav_10
Organism:
Ciona savignyi ( Ciona_savignyi )
Location:
reftig_259:375263-376367 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
55.04 %
Coverage:
99.73 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
CSA.9185
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_csav_10
TCTGAAAAAATGGGGATTTTAGAAAAAATATCTGAAATTGAGAAGGAAATTCAGCGAACA
CAGAAAAATAAAGCGACTGAGTATCATCTTGGGCTGTTGAAGGCAAAACTCGCAAGATAC
AGAGCCCAACTATTGGAAGGTCCGAAAAGTTCAGGTCCAAAAGGAGAGGGATTTGATGTC
ATGAAATCTGGAGACGCGAGAGTTGCGTTGGTTGGATTTCCATCTGTCGGGAAATCGACG
CTTCTGTCAACGCTCACGTCAACCGAGAGCGAATGTGCTTCGTATGAATTCACCACGTTG
ACCTGCATCCCCGGAGTTATCGAGCACAACGGAGCAAGAATCCAACTCCTTGATCTTCCA
GGGATCATTGAAGGAGCTGCAGCGGGGAAGGGAAGAGGAAGACAAGTGATCTCGGTCGCA
AGAACCGCTGATATTGTTGTAATGATGCTCGATGCACTTAAGGGTGACGTGCAGAAAGAA
CTTCTGACAAAAGAACTCGAAGCAGTCGGAATTCGATTGAATAAAAAGCGACCGAACATT
TATTTTAAGGAGAAGAAAGGAGGTGGGATTTCTATTACTGCGACCTGCATCTTGACAAAA
ATCTCTGAGAGGATGATTAATTTAATCCTCCACGAATACAAAATCTTCCACGCGGATGTA
GTTTTCCGTGCTGATTATGGAACAGATGAATTTATTGATGTTGTGGTGGGCAAGCGGAAA
TACATGCCGTGTCTGTATGTTTACAACAAAATCGACCAGATTTCGATTGAGGAAGTTGAT
CGTATCGCATGGCAGCCTCATTGCGTCGTCATCAGCTGTAATATGCTGCTAAACCTTGAT
TACTTGAAAGATATGATATGGAAATATCTGCAATTAATCACAGTCTACACTAAAAAACCA
GGGAAGAAGCCTGATTTTGCTGACGGTTTGATCCTGCGCTCGAACAGCAATGTAGAACAC
GCTTGCCATGCCATCCATAGAACACTGGTCGAGAATTTTAAATACGCGCAAGTATGGGGA
AGAAGTGCTAAATATAATGGTCAGCATGTGGGGTTGGGTCACAAACTTGCGCATGAGGAT
GTTGTCCTTGTTACGAAGAAATAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSILTRISEIEAEMARTQKNKATAGHLGMLKARLAKLKRELITPKGGGGGGP-GEGFDVAKTGDARIGFVGFPSVGKSTLLSNIAGVYSEVASYEFTTLT
M.IL..ISEIE.E..RTQKNKAT..HLG.LKA.LA.....L....G....GP.GEGFDV.K.GDAR...VGFPSVGKSTLLS......SE.ASYEFTTLT
Retrocopy
MGILEKISEIEKEIQRTQKNKATEYHLGLLKAKLARYRAQLL--EGPKSSGPKGEGFDVMKSGDARVALVGFPSVGKSTLLSTLTSTESECASYEFTTLT


Parental protein
TVPGVIKYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCGLIFIVLDVLKPLGDKRLIEKELEGFGIRLNKKPPNIHYKVKEKGGINFQAMVPQSEL
..PGVI...GA.IQLLDLPGIIEGA..GKGRG.QVI.VART.......LD.LK....K.L..KELE..GIRLNKK.PNI..K.K..GGI...A.......
Retrocopy
CIPGVIEHNGARIQLLDLPGIIEGAAAGKGRGRQVISVARTADIVVMMLDALKGDVQKELLTKELEAVGIRLNKKRPNIYFKEKKGGGISITATCILTKI


Parental protein
DGELAKKILSEYRIHNADIILKEDCSADDLIDMVEGNRVYIPCIYLLNKIDQISIEELDIIYKIPHCVPISAHHKWNFDDLLEKMWEYLKLIRIYTKPKG
.......IL.EY.I..AD.....D...D..ID.V.G.R.Y.PC.Y..NKIDQISIEE.D.I...PHCV.IS.....N.D.L....W.YL.LI..YTK..G
Retrocopy
SERMINLILHEYKIFHADVVFRADYGTDEFIDVVVGKRKYMPCLYVYNKIDQISIEEVDRIAWQPHCVVISCNMLLNLDYLKDMIWKYLQLITVYTKKPG


Parental protein
QLPDYEAPVVLSSEKSSVEDFCNKIHRTLLKQFKHALVWGSSVKYNPQSVGKEHVLMDEDVVQIVKR
..PD......L.S..S.VE..C..IHRTL...FK.A.VWG.S.KYN.Q.VG..H.L..EDVV...K.
Retrocopy
KKPDFADGLILRS-NSNVEHACHAIHRTLVENFKYAQVWGRSAKYNGQHVGLGHKLAHEDVVLVTKK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide