RetrogeneDB ID:
retro_csav_12
Organism:
Ciona savignyi ( Ciona_savignyi )
Location:
reftig_77:18989-20087 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
50.95 %
Coverage:
71.43 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_csav_12
AAGCATAAAATGGCTGGCCCTTTAAACAACATGGCTGATAGGGAATTTAATCATTACGAG
TTAAACAAGACTGATTGGGAGGTGCCATCTAAATATGAAGATTTGGTTCCCATCGGTTGC
GGGGCTTATGGTTCGGTGTGTTCGACTCTTAACTCCCAACTAAAAATGCGAATGGCGGTG
AAGAAATTGGCACGGCCGTTCCAGTCGGTCACCCATGCGAAGCGCACGTACAGAGAACTG
AGATTGCTCAAGCACATGCACCATGAAAACGTGATTGGATTGCTCGACGTCTTCACCCCT
GCTTCCTCGATTGAAAACTTTACCGACATGTACCTAGTCACTCATCTTATGGGTGCGGAT
TTGAACCAGATCATTAAATCGCAGAAACTCACTGACGACCACGTGCAGTTTTTGATTTAC
CAGATCCTAAGAGGCCTAAAGTACATTCACTCTGCCGGCATTATTCACAGAGATTTAAAG
CCAAGTAATATCGCTGTCAACGAAGATTGCGAGTTAAAAATCCTCGATTTCGGCCTTGCG
CGCTTAACAGATGATCAAATGACCGGTTACGTGGCGACCAGATGGTACAGAGCACCGGAG
ATCATGCTAAACTGGATGCATTATAACCAGACTGTTGATATCTGGTCTGTGGGTTGTATC
ATGGCGGAACTTCTAACAGGACAGACTCTTTTCCCAGGCTCCGACCACATTGATCAGTTA
AAATCCATCATGACCTTATGCGGAACGCCGAGAGATGACTTGCTTGAGAAAATCATCTCA
CAGTCAGCGCGGAACTTCATTAAAAACCTCCCCATCATTCCAAAGAAGGAATTCATCAAC
GTATTTGTTGGCGCGAATCCGAAAGCAGTCGATTTACTAGAGCGCATGCTCGTGCTCGAC
ACTGACTGCCGGTTAACAGCAAGCGAGGCGTTGCAACATCCATATTTGGAGAAATTCCAC
GACCCAGAAGATGAACCTACAGCCCCTCTGTACGACAAGACGTACGAAGACGCCGAGATT
TCGATAGACGAGTGGAAGCAACTGGCTTACGACGAAATAGTCAACTTTAAATTTTCACCG
GACCTTATAACAGATTAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ANAEFYTLQVSDSVFTVLKRYQSLKPIGSGAQGMVCAAHDTVLGQNVAIKKLSRPFQNPTHAKRAYRELVLMRAVNHKNIIGLLNVFSPQSTYEEFSHVY
A..EF...........V...Y..L.PIG.GA.G.VC......L....A.KKL.RPFQ..THAKR.YREL.L.....H.N.IGLL.VF.P.S..E.F...Y
Retrocopy
ADREFNHYELNKTDWEVPSKYEDLVPIGCGAYGSVCSTLNSQLKMRMAVKKLARPFQSVTHAKRTYRELRLLKHMHHENVIGLLDVFTPASSIENFTDMY


Parental protein
LVMELMDASLCQVIQ-MDLDHERLSYLLYQLLCGIKHLHSAGIIHRDLKPSNIVVRSDCTLKILDFGLARTAGGSFMMTPYVVTRYYRAPEVILG-MGYQ
LV..LM.A.L.Q.I....L.......L.YQ.L.G.K..HSAGIIHRDLKPSNI.V..DC.LKILDFGLAR.......MT.YV.TR.YRAPE..L..M.Y.
Retrocopy
LVTHLMGADLNQIIKSQKLTDDHVQFLIYQILRGLKYIHSAGIIHRDLKPSNIAVNEDCELKILDFGLARLTDD--QMTGYVATRWYRAPEIMLNWMHYN


Parental protein
EVVDIWSVGCIFGEMIRGQVLFPGTDHIDQWNKITEQLGTPSQDFINK-LQPTVRNYVLNRPM
..VDIWSVGCI..E...GQ.LFPG.DHIDQ...I....GTP..D...K......RN...N.P.
Retrocopy
QTVDIWSVGCIMAELLTGQTLFPGSDHIDQLKSIMTLCGTPRDDLLEKIISQSARNFIKNLPI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide