RetrogeneDB ID:
retro_csav_13
Organism:
Ciona savignyi ( Ciona_savignyi )
Location:
reftig_25:1506300-1507047 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
51.3 %
Coverage:
89.64 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
CSA.5346
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_csav_13
TTTATAATGTCTTCAAGAGAAGACCTGATTGCTCGTGCCAAATTGTCGGAGCAGGCGCAA
CGTTATGACGAAATGGCAGCTGCAATGAAAATTGTGGTCGAAATGGGCTCTGAGTTGAGT
AACGACGAAAGAAACTTACTCTCAATAGCGTATAAGCACACAACCGGGGCCAGACGGCAA
TCGTGGCGAGTTATGTCAAGCGTGGAACAAAAGGCAGAGGAGGAAAGCGAAACCAGGGTC
GAAATTGTTCATACGTACAGAGAAAAAATAGAAGACGAACTTGAGGCAATATGTCAAGAG
ATAATACAACTTATTGATACCCATTTGCTCAAGTCAGCTCAGGATAAAGACAGTCAGGTG
TTCTACTACAAAATGAAGGGAGACTACTTCAGATATATGTGCGAAGTCTTCTCTGTGCCG
GAGAAAAGGAAAAAGGTAATGTCCGGTGCGAATCGAGCTTATAACGCCGCTAACGATGAA
GCAGAAAGAATGTCACCCATCAACCCAATAAAACTTGGTTTGGCGCTAAATTATTCAGTG
TTTCTTTACGAGATCAAAAACGGTGAAAAAAAGGCGATCAGAATCGCCCAAGAAGCGTTC
GATAACGCCTTGGCCAAGGTGGAGCTGTTGAAAGGAGAAGCATATAAGGACTCCACCATC
ATAATGCAACTTATCAGGGACAATCTTACAGAGTGGAACTCCCCAGACAAAGTAGTGCAA
GATCTATTGGAGGACACACAGGGCTGA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
REDIVYRAKLAEQAERYDEMVAEMKSVAKLGVELSVEERNLLSVAFKNVIGARRASWRIISSIEQKEEKNNE----MISAYKKKVEDELKKICTDILDLI
RED...RAKL.EQA.RYDEM.A.MK.V...G.ELS..ERNLLS.A.K...GARR.SWR..SS.EQK.E...E........Y..K.EDEL..IC..I..LI
Retrocopy
REDLIARAKLSEQAQRYDEMAAAMKIVVEMGSELSNDERNLLSIAYKHTTGARRQSWRVMSSVEQKAEEESETRVEIVHTYREKIEDELEAICQEIIQLI


Parental protein
KTFLIPNSVNAESKVFYFKMQGDYHRYLAE-FETGSDRKDAAEKSLVSYKGAEEVAQTELAPTHPIRLGLALNFSVFYYEILNSPDRACRLAKTAFDDAI
.T.L........S.VFY.KM.GDY.RY..E.F.....RK.........Y..A...A.....P..PI.LGLALN.SVF.YEI.N....A.R.A..AFD.A.
Retrocopy
DTHLLKSAQDKDSQVFYYKMKGDYFRYMCEVFSVPEKRKKVMSGANRAYNAANDEAE-RMSPINPIKLGLALNYSVFLYEIKNGEKKAIRIAQEAFDNAL


Parental protein
AELDTLSEESYKDSTLIMQLLRDNLTLWTS
A....L..E.YKDST.IMQL.RDNLT.W.S
Retrocopy
AKVELLKGEAYKDSTIIMQLIRDNLTEWNS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide