RetrogeneDB ID:
retro_csav_14
Organism:
Ciona savignyi ( Ciona_savignyi )
Location:
reftig_0:2507888-2508308 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
52.11 %
Coverage:
54.05 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_csav_14
ATTCTTACAATGAGAGACACCGAGGATATATGGTTTAAGAGTTTTAAGAAACAAATAACT
CAAAATACTACCTTTAAGAACATATTACAAACTTGTTTGTCAGTTTTAGGATTTAAACTT
TTTTTATTTGGTCAAAGAATAGTTCAAGCTGGATTTGGTTATAAACTTGGTTTTCGAAAT
GATATGAATGAAATGCTATTCAAAATGCATTATCGTCGCCATAACACACATGTAATACAG
AATACCCCAAAAGCTCAGCTGTTGGTTTTCAATCTAAAAGATGGATGGGGGCCACTGTGT
GAATTCCTAGAACTACCTGAACCTGATACTGCATTTCCACACAGAAATAAAAACGCAGGA
ATTACTGAGGAATACTTGAATACACATCCTGTTTTCCTGAGAATGCAGCGTGAATCTAAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VFTMRESEEKWWESMKNQQAENSSQLVNIM--FLSPTGRRLFRYGSAIVKAVIGQDVNPTSKTLNEMLFKMAYRRHNAHVLQNAPKDQLLVFNFKDGWDP
..TMR..E..W..S.K.Q...N.....NI....LS..G..LF..G..IV.A..G..........NEMLFKM.YRRHN.HV.QN.PK.QLLVFN.KDGW.P
Retrocopy
ILTMRDTEDIWFKSFKKQITQNTT-FKNILQTCLSVLGFKLFLFGQRIVQAGFGYKLG-FRNDMNEMLFKMHYRRHNTHVIQNTPKAQLLVFNLKDGWGP


Parental protein
LCQFLGVPVPKIPFPHKNKNASITTEILKTNKTALRMQQEFK
LC.FL..P.P...FPH.NKNA.IT.E.L.T....LRMQ.E.K
Retrocopy
LCEFLELPEPDTAFPHRNKNAGITEEYLNTHPVFLRMQRESK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide