RetrogeneDB ID:
retro_csav_15
Organism:
Ciona savignyi ( Ciona_savignyi )
Location:
reftig_1:3473725-3474556 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
51.42 %
Coverage:
97.23 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_csav_15
GTACATATAAATGCTCGCTCTGTCCTGTACCCTCAATCCAGCTGTAAAAGATTTCCTGTT
CCTGATGGTAAAGTTAGTTGGAAAGTTGGTTTTAAAGAATACACTCCTGTCAACCACACA
GCGCCAATCGTAGCATCCAACCCCCCATGGGCCGATGTTGATGTCACCAAGAGTCCACTG
AACATCTTAAAGTACAATGCCATTGACGGAAAAACAAATCGTAAAAGTTTCACAGGGGTC
TATGATGTAATAAACAATGTTCCGATTAACCCAGCAGGGAGAACAGGGGTTACCGGACGT
GGGTTGCTTGGAAAATGGGGACCGAACCATGCAGCTGATCCCATTGTGACACGCTGGAAA
TGCAATGAAGGGGTTATCGTGAAACATGTAAAAACAAAGCTACCTGTCCTCCAATTTGTT
GCTATTCAGAGGAAGGACAATGGTGAATGGGCGATACCAGGTGGAATGGTGGATGCTGGT
GAGAGAGTTTCGGTTACGTTAAAGCGTGAATTCGGAGAGGAAGCATTAAATGCATTGGAT
AACAAAGCTGACAACGCAAAAATCAACAAACTAATCAAAGAGCTTTTTAAATCAGGAAAA
ACAGTCTTTGAGGGGTATGTGGATGACCCAAGGAACACTGACAATGCGTGGATGGAGACT
GTGGCCGTTAATTTCCACGACGATAATGGGAACAGTGTTGCCAAATTACCGCTAAGCGCC
GGTGACGATGCAGGTGCGGTTCGTTGGATGGATGTGGGGAGGGAACTAATGCTCTATGCT
TCGCATAAACAGTTTTTGAAGCAAACAGCTAAAAATTTAGCTGCCCATTGG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VHINSRSPEYPGSKIKRFVVPDKSVSWSVPLPGYNPPQYTSPAVKSQPIWADPPLEPQPTGSTVSLPFNADDKERNVSRKSFTGKYKVVGGLPRNPSGRT
VHIN.RS..YP.S..KRF.VPD..VSW.V....Y.P...T.P.V.S.P.WAD......P......L..NA.D...N..RKSFTG.Y.V....P.NP.GRT
Retrocopy
VHINARSVLYPQSSCKRFPVPDGKVSWKVGFKEYTPVNHTAPIVASNPPWADVDVTKSPLNI---LKYNAIDGKTN--RKSFTGVYDVINNVPINPAGRT


Parental protein
GLTGRGLLGRYGPNHAADPVVTRWERDETGTVIKIHGK-PVLQFVAICRNDTGEWAIPGGMVDAEENITQTLKREFSEEVLLDVDDQKPGTEIQTQLNKL
G.TGRGLLG..GPNHAADP.VTRW...E...V.....K.PVLQFVAI.R.D.GEWAIPGGMVDA.E....TLKREF.EE.L...D.......I......L
Retrocopy
GVTGRGLLGKWGPNHAADPIVTRWKCNEGVIVKHVKTKLPVLQFVAIQRKDNGEWAIPGGMVDAGERVSVTLKREFGEEALNALDNKADNAKINKLIKEL


Parental protein
FNSGVKVYEGYSDDHRNTDISWIETSVFNFHDDNGSTFDRIKLHPGEETSGVQWKRIDQSINLFASHFQFLEKVAKMHNAHF
F.SG..V.EGY.DD.RNTD..W.ET...NFHDDNG.......L..G.....V.W........L.ASH.QFL...AK...AH.
Retrocopy
FKSGKTVFEGYVDDPRNTDNAWMETVAVNFHDDNGNSVAKLPLSAGDDAGAVRWMDVGRELMLYASHKQFLKQTAKNLAAHW


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide