RetrogeneDB ID:
retro_csav_17
Organism:
Ciona savignyi ( Ciona_savignyi )
Location:
reftig_14:591614-592448 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
67.99 %
Coverage:
57.29 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_csav_17
TCAAAAGTTATTCATATTCGAAGCCTACCAAGTGATGTAACTGAACAAGAAGTCATTCAT
CTAGGACTGAACTTTGGAAAAGTTACAAACCTACTTATGTTGAAAGGTAAGAATCAAGCA
TTTTTAGAAATGGAAAATGCTGATGTTGCCAGAGATATGGTGAACGAATGTGCTGTCAGT
CCACCTACAATTCGACAACGCGTACTTTATGTTCAGTATTCTAATCACAAGGAGCTGAAA
ACAGACAGTTCTCCGAATCAGGTTAAAGCACAGGCTGTTTTACAAGCAATGCAGCAAACT
GAAGGTGGGCCAAACCATGTATTACGTGTTGTTGTTGAAAATATGCTATATCCCATTACT
TTGGATGTATTGCACACGATTTTTACCAAATTTGGTGTGGTGCTAAAAACAATAACATTC
ACCAAAAACAATCAGTTTCAAGCACTTTTGCAAATGGGAGATGCTGTCCAGTCCCAAACA
GCAAAGTTATCATTGGACGGTCAAAATATTTATAACGGTTGTTGCACACTCCGTATAGAA
TACAGCAAGTTACCAGCATTAAATGTGAAGTACAATAATGATAAAAGCCGAGACTACACA
CGGAATGATTTACCTTCTGGTGAAAACTCAATACTGAGTAATCCTCCTTCATCGTTGCAA
TCTATACTATCAAGTTCACCTGGTCTGATGCCGAATCCATATTCTAATAACGCGGCAGCC
AGTATTGCTGCTGCTCTACAGCAATCCCAACTAAGCACATTATCGAATGCTGTGAGCTCA
AGAAATGCACTGAATAATGCGGCTGTTGCAGCGCAACTTGCCAGTTTAATTAGT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SKVVHLRSLPSDVTDNEVIQLGLSYGHVTNVLMLKGKNQAFLEMEDEEIANQMVSSSGLNPPTIRQRIIYVQFSNHKELKTDSSPNQLKTQAILQAMQKR
SKV.H.RSLPSDVT..EVI.LGL..G.VTN.LMLKGKNQAFLEME....A..MV......PPTIRQR..YVQ.SNHKELKTDSSPNQ.K.QA.LQAMQ..
Retrocopy
SKVIHIRSLPSDVTEQEVIHLGLNFGKVTNLLMLKGKNQAFLEMENADVARDMVNECAVSPPTIRQRVLYVQYSNHKELKTDSSPNQVKAQAVLQAMQQT


Parental protein
EGGPNHVLRAVIENMLYPITLDVLHTIFSKFGVILKIITFTKSSQFQALIQMADALQSQTAKLSLDGQNIYNGCCTLRIEYSKLSALNVKFNNDKSRDYT
EGGPNHVLR.V.ENMLYPITLDVLHTIF.KFGV.LK.ITFTK..QFQAL.QM.DA.QSQTAKLSLDGQNIYNGCCTLRIEYSKL.ALNVK.NNDKSRDYT
Retrocopy
EGGPNHVLRVVVENMLYPITLDVLHTIFTKFGVVLKTITFTKNNQFQALLQMGDAVQSQTAKLSLDGQNIYNGCCTLRIEYSKLPALNVKYNNDKSRDYT


Parental protein
RNDLPTGEPTSILGTGNALHSMLGGA-GLMPSPYTNQ--TNIAAALQQSQLASLASATGALHHLTGTGMPGSSTQMVT
RNDLP.GE..........L.S.L....GLMP.PY.N.....IAAALQQSQL..L..A......L..............
Retrocopy
RNDLPSGENSILSNPPSSLQSILSSSPGLMPNPYSNNAAASIAAALQQSQLSTLSNAVSSRNALNNAAVAAQLASLIS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide