RetrogeneDB ID:
retro_csav_18
Organism:
Ciona savignyi ( Ciona_savignyi )
Location:
reftig_17:1025348-1025783 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
53.1 %
Coverage:
97.97 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_csav_18
GCCTTTAAGAGGTTAAAGAAAGAATACCAGCAGCTTCGGGAACACCCGGATGATACAATT
CGTTTGAAACCGGTAAATGATGATTTTCTGACCTGGGAAGCCGCGATCCGAGGACCCGAT
GGCACACCGTACGAAGGAGGAAGATTTATTGTTGGCATTAATGTTCCGTTATCGTATCCA
TTTGCACCTCCGAAAGTACGTTTCAAGACTCGAGTCTACCACCCGAATATTAGCCAAGAT
GGGCGGATATGCCTTGATTTGTTAAAAAAGACATGGTCACCAGCGTTAACCTTATCCTCG
CTGCTTATGTCGCTTATTTCGTTGCTTGGCGACCCCAACCCAGATGACCCGCTTGTATTT
GCAATCGCAGATACTTATAAGAACAACAGACAGCAGTACAACATGACTGCGAGACACTGG
ACCCACGCATATGCT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ALKRINKELQDLSRDPPAQCSAGPVGDDMFHWQASIHGPSDSPFHGGLFFLTIHFPTDYPFKPPKVGFSTKIYHPNINSNGSICLDILRSQWSPALTVSK
A.KR..KE.Q.L...P.......PV.DD...W.A.I.GP...P..GG.F...I..P..YPF.PPKV.F.T..YHPNI...G.ICLD.L...WSPALT.S.
Retrocopy
AFKRLKKEYQQLREHPDDTIRLKPVNDDFLTWEAAIRGPDGTPYEGGRFIVGINVPLSYPFAPPKVRFKTRVYHPNISQDGRICLDLLKKTWSPALTLSS


Parental protein
VLLSICSLLNDPNPDDPLVPEIARVYKTDRKKYNQTACEWTKKYA
.L.S..SLL.DPNPDDPLV..IA..YK..R..YN.TA..WT..YA
Retrocopy
LLMSLISLLGDPNPDDPLVFAIADTYKNNRQQYNMTARHWTHAYA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide