RetrogeneDB ID:
retro_csav_19
Organism:
Ciona savignyi ( Ciona_savignyi )
Location:
reftig_19:2141468-2142527 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
62.71 %
Coverage:
99.72 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
CSA.10341
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_csav_19
ATGGGTTGTGCTTCTTCGACGTCGGGCGATGCAATGGCAGCCAATAGATCCCGTCAGATC
GACCGTGGCATCAAGGAAGATGCGAAACACGTCGACAAAGAAGTGAAATTGCTCCTGTTG
GGTGCTGGAGAGTCGGGAAAGAGCACGATCGCGAAACAGATGAAGATTCTCTTCAAAGAT
GGCTTCTCGGAAAGAGAGAGGAACAGTTATAAACATGTTGTGTTTGCAAATGTCGTGCAA
TCGGTTGTCGCTATTGTGAAGGCGATGCCAACTCTACAGATCGAATTCGAGAACCCCGAT
CGTTTGGAAGACGCTAAAAAAGTACTGACTGCCGGCCAGACGTTGGGAGATTTTGAGCTA
GCTGGTGAGATCGGAGAAGCGGCGATACGACTATGGGAGGATGCAGGACTCCGCAAGAGT
TACGTGCGTTCGCGCGAGTACCAGCTTAACGACTCGGCGGAGTACTATCTCCAAGCGCTG
GAGCGATTGAGCGACCCTGGCTACATCCCTACTGAGCAAGATGTCCTGAGGACTCGAGTT
AAAACAACCGGTATCACTGAGACGAACTTCAATTACAAAAATCTTGAATTCCGGCTGATT
GATGTCGGAGGACAGAGATCAGAGCGGAAGAAGTGGATTCATTGTTTTGAGGATGTAACA
GCTATTATTTTCTGCGTCGCGCTCTCGGCGTACGATCTTCTGTTGGCGGAAGACGAAGAA
ACAAACAGGATGCACGAGAGCATGCGACTCTTCGACTCGATATGCAACAACGCTTGGTTC
AGGAACACATCGATGATCCTCTTTTTGAACAAAACCGACATCTTCCGGAGCAAGATCGAA
CACTCTCCGCTGAGCGCTTGCTTCCCGGATTACAAGGGGAAGAACACCTTCGACCAGGCA
GCGCCTTACATTCAGATTCAGTTCGAAAATCTGAACCATCACCCTGAAAAAATGGTGTAC
ACCCACTTTACATGCGCGACGGACACTACGAATGTGCAGTTCGTGTTTGATGCGGTTTCC
GACGTCATTTTAACCAAGGTGCTCGGGGATTTGGGTCTG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MGCTVSTD-DKAANERSRAIDRNLRVDGDKQSREVKLLLLGAGESGKSTIVKQMKIIHEDGYSEEECLQYKAVVYSNTLQSLITIVRAMGNLKIDFGSPE
MGC..ST..D..A..RSR.IDR....D......EVKLLLLGAGESGKSTI.KQMKI...DG.SE.E...YK.VV..N..QS...IV.AM..L.I.F..P.
Retrocopy
MGCASSTSGDAMAANRSRQIDRGIKEDAKHVDKEVKLLLLGAGESGKSTIAKQMKILFKDGFSERERNSYKHVVFANVVQSVVAIVKAMPTLQIEFENPD


Parental protein
RADDARQLFSLAGSLDDGEMTQELGDCMKRMWSDKGVQVCFSRSREFQLNDSAQYYLDALERLTEHHYVPTQQDVLRTRVKTTGIVEVHFNFKGLTFKMF
R..DA.........L.D.E...E.G....R.W.D.G......RSRE.QLNDSA.YYL.ALERL....Y.PT.QDVLRTRVKTTGI.E..FN.K.L.F...
Retrocopy
RLEDAKKVLTAGQTLGDFELAGEIGEAAIRLWEDAGLRKSYVRSREYQLNDSAEYYLQALERLSDPGYIPTEQDVLRTRVKTTGITETNFNYKNLEFRLI


Parental protein
DVGGQRSERKKWIHCFEGVTAIIFCVALSAYDLVLAEDEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKDLFEVKILKSPLTICFPEYPGQNTYEEA
DVGGQRSERKKWIHCFE.VTAIIFCVALSAYDL.LAEDEE.NRMHESM.LFDSICNN.WF..TS.ILFLNK.D.F..KI..SPL..CFP.Y.G.NT...A
Retrocopy
DVGGQRSERKKWIHCFEDVTAIIFCVALSAYDLLLAEDEETNRMHESMRLFDSICNNAWFRNTSMILFLNKTDIFRSKIEHSPLSACFPDYKGKNTFDQA


Parental protein
AAYIQLQFEDLNKRKDSKEIYTHFTCATDTTNIQFVFDAVTDVIIKNNLKDCGL
A.YIQ.QFE.LN.....K..YTHFTCATDTTN.QFVFDAV.DVI....L.D.GL
Retrocopy
APYIQIQFENLNHHPE-KMVYTHFTCATDTTNVQFVFDAVSDVILTKVLGDLGL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide