RetrogeneDB ID:
retro_csav_2
Organism:
Ciona savignyi ( Ciona_savignyi )
Location:
reftig_76:1753932-1754487 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
56.98 %
Coverage:
98.35 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
CSA.10326
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_csav_2
TTCCATACAAACATGGGTGGAATCTTTAGCTCCATTTTTAGTTCGCTTTTCGGACAAAAA
GAGCGACGTATCTTAATCCTGGGCCTGGATGGGGCAGGGAAAACCACCATTCTGTACAAG
CTACAAGTTGGTGAGGTGGTGACAACGATACCAACCATCGGGTTTAACGTGGAGACGCTG
ACGTACAAGAACCTGAAATTCCAAGTTTGGGATTTAGGCGGACAGACCAGTATTCGGCCG
TACTGGAGGTGCTACTATAGCAACACCGACGCTATTATCTACGTAGTGGACAGCATGGAT
CGTGAGAGAATGAGCACTTCGAAACAGGAGTTGGTTAGCATGCTTGAAGAAGAAGAGCTG
AAAAAGGCGATTCTTGTCGTTTTTGCGAATAAACAAGACATTGACGGCGCTCTTTCTGAG
ACCGAAGTCGCTAAAGAACTAGGCTTAGCATGCATCAAGGACCGAAAATGGCAGATTTTT
AAAACCAGTGCTGTAAAAAGCATCGGCCTTGATTCTGCAATGGACTGGCTCGTTAACGCC
ATTCAGAACCAGTGA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MGSVFGKLFSGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDKERM
MG..F...FS.LFG.KE.RIL..GLD.AGKTTILYKL..GE.VTTIPTIGFNVET..YKN..F.VWD.GGQ..IRP.WR.Y..NT...I.VVDS.D.ERM
Retrocopy
MGGIFSSIFSSLFGQKERRILILGLDGAGKTTILYKLQVGEVVTTIPTIGFNVETLTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSMDRERM


Parental protein
TEAREELQRMLNEDELRDAVLLVFANKMDLPNAVSAAEIQQELGLGSLRTRKWYIQATCATTGNGLYEGLDWLSNQLKS
.....EL..ML.E.EL..A.L.VFANK.D...A.S..E...ELGL.....RKW.I..T.A....GL....DWL.N....
Retrocopy
STSKQELVSMLEEEELKKAILVVFANKQDIDGALSETEVAKELGLACIKDRKWQIFKTSAVKSIGLDSAMDWLVNAIQN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide