RetrogeneDB ID:
retro_csav_21
Organism:
Ciona savignyi ( Ciona_savignyi )
Location:
reftig_220:574874-575816 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
60.0 %
Coverage:
98.75 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_csav_21
ATGGGTTCCAAAGTGTCACGTGAGGATTTCGAGTGGGTTTATACGGATCAGCCCCACGGG
GATCGACGGAAAGTGATGCTTAAGAAGTACCCTCAAATCAAGAAGTTATTTTGCACTGAT
TCCCACTTCACATACGTAGTAACAGCCATGGTTGCGGCACAAGTCATAGCTTGTTATTTT
GTGAAAGACATGAGCTGGCCTTGGATTTTCGCACTTGCTTATTTCTTCGGTGGAACCATA
AACCACTCGCTGACCCTCGCGATTCATGATATTTCCCACAACACGGCTTTTGGATACAAC
AATGCGATATGGAACCGGTATTTCGGGATGTTAGCAAACTTACCCATCGGAGTTCCAATG
TCAATAAGTTTCAAGAAATACCATGTTGACCACCATCGTTATTTAGGGGGTGATGTGCTT
GATGTGGACCTTCCAACACCTTTGGAAGGATATCTTTTCCGCAACAGTTTTTTGAAGATG
ATCTGGCTTATTTTAAATCCCTTGTTTTATGTGCTTCGGCCGTTAGCTGTTAATCCCAAA
CCAATGACCTTGCTTGAGTTACATAACGCTGTTGTACAGATAATATTTGATGGCCTCATT
TTATATTTCTTTGGTTACAAACCAGTTATTTACTTGATCCTTGGCACATTGCTGTCCATG
GGTCTCCACCCAATTACCGGCCACTTTATATCTGAGCACTACATGTACACAAAAGGTTTT
GAAACTTACTCGTACTATGGCTGTTTGAACCTGGTGACATTCAACGTGGGTTACCACATG
GAGCATCATGATTTCCCTGCCATCCCAGGTTCCAAGTTGCCGCTGATGAAGAAGATCGCT
CCGGATTATTATGACGAGCTCCCGAGTTACACTTCCTGGTGCAAGGTCTTGTGGGACTTT
GTTTTTGACCCTGCCATTGGACCCTTCGCAAGAGTCCGACGT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MGNYVTRTSYEWVYTDEPHASRRKEILEKYPDMKKLMKVNPHFKWVVAAEIAFQMIMCYLVKDASWLWVFVITYVIGGTVNHSLTLAVHELSHNRAFGHG
MG..V.R...EWVYTD.PH..RRK..L.KYP..KKL.....HF..VV.A..A.Q.I.CY.VKD.SW.W.F...Y..GGT.NHSLTLA.H..SHN.AFG..
Retrocopy
MGSKVSREDFEWVYTDQPHGDRRKVMLKKYPQIKKLFCTDSHFTYVVTAMVAAQVIACYFVKDMSWPWIFALAYFFGGTINHSLTLAIHDISHNTAFGYN


Parental protein
KHAIWNRVLAFIANLPIGVPFCVSFKKYHLEHHRKLGVDGVDTDIPMPIEGKLFRTTARKLLWVILQPFLYSLRPLFINPKPLNRLDYFNLVLQILFNGF
..AIWNR.....ANLPIGVP...SFKKYH..HHR.LG.D..D.D.P.P.EG.LFR....K..W.IL.P..Y.LRPL..NPKP...L...N.V.QI.F.G.
Retrocopy
-NAIWNRYFGMLANLPIGVPMSISFKKYHVDHHRYLGGDVLDVDLPTPLEGYLFRNSFLKMIWLILNPLFYVLRPLAVNPKPMTLLELHNAVVQIIFDGL


Parental protein
IVHSLGAKPLVYLILGTFLGLGLHPISGHFIAEHYMFLKGHETYSYYGPLNTLTFNVGYHVEHHDFPSITGSRLPLVKQIAPEFYDHLPMYSSWTKVIHD
I....G.KP..YLILGT.L..GLHPI.GHFI.EHYM..KG.ETYSYYG.LN..TFNVGYH.EHHDFP.I.GS.LPL.K.IAP..YD.LP.Y.SW.KV..D
Retrocopy
ILYFFGYKPVIYLILGTLLSMGLHPITGHFISEHYMYTKGFETYSYYGCLNLVTFNVGYHMEHHDFPAIPGSKLPLMKKIAPDYYDELPSYTSWCKVLWD


Parental protein
FVTDPSIGPYSRIKR
FV.DP.IGP..R..R
Retrocopy
FVFDPAIGPFARVRR


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide