RetrogeneDB ID:
retro_csav_22
Organism:
Ciona savignyi ( Ciona_savignyi )
Location:
reftig_24:715943-716321 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
59.84 %
Coverage:
78.88 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_csav_22
AATTCTAAAATGTCATTTACGAAAGAAGAACTGAAAAAGAAGCTGACACCTGAGCAATAC
AATGTTACTCAGGAGAAAGGCACTGAAGCACCATTCACTGGAGAATATGACAAGCATTTC
CAAGCTGGAGAGTATAAGTGTGTGGTTTGTGAGACAAACTTATTCAAATCTGACGACAAA
TATGATGCTGGGTGTGGATGGCCTGCATTTTCAGCAGGAGATACTTCATCTATTGACGAG
CACAAAGATGAATCGCTCGGCATGATGAGAACGGAGGTTGTGTGTAACAAGTGTCAAGCC
CATCTGGGCCACAAATTCAACGATGGACCAAAATCTACAGGCGTGAGGTACTGTATCAAC
AGTGCTTCTCTGAAGTTC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
DEQTAFSENDLREKLTPLQYHVTQEKGTEEPFTGEFNDNKEHGTYKCVVCGTTLFSSEEKYDSGSGWPSFFETTQKSAIQENVDKSEGRTRTEVVCKKCQ
.....F....L..KLTP.QY.VTQEKGTE.PFTGE.......G.YKCVVC.T.LF.S..KYD.G.GWP..F.....S.I.E..D.S.G..RTEVVC.KCQ
Retrocopy
NSKMSFTKEELKKKLTPEQYNVTQEKGTEAPFTGEYDKHFQAGEYKCVVCETNLFKSDDKYDAGCGWPA-FSAGDTSSIDEHKDESLGMMRTEVVCNKCQ


Parental protein
AHLGHVFKDGPEPTGLRYCINSASLSF
AHLGH.F.DGP..TG.RYCINSASL.F
Retrocopy
AHLGHKFNDGPKSTGVRYCINSASLKF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide