RetrogeneDB ID:
retro_csav_24
Organism:
Ciona savignyi ( Ciona_savignyi )
Location:
reftig_37:2915301-2915799 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
65.09 %
Coverage:
58.28 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_csav_24
TATTTGTAGATTGTTATTAACATGTCTTATTTAACAGCTTCAAATGTGGCAACATACAAG
GGTTATGAATTCAGTTTCTACACCAATAATGAATATTGGAAATCAACTTACGATGATGCA
AAGCAAGCTTGTGTGGATGCTGGTGCTCGATTGGCTGAAATAAAGTCGGCTGATGTTCAA
GACTTTATAACAACTCAACTAACTGACTTGGGTTTGGTGGAAAGTTTTAGTAATTGGAAA
CAAGGATATTGGATTGGTGGAGTGTGTGAGAGTGGAATTAACAATTGGAAATGGGAAGAT
GGGACCAGTATTGGCGGTAGTAACTATGACAACTGGTTTGTCGGTTGTGGGCTCTCTGAA
CCCAATGGTAATGGAGCAACATACAGAACACATATTTTACCATTTGAAGACGGGAATTAT
GGCAGTCAAACTTGCAATGCTTTAGGAAAATGGGGGGATGATGGTAAAAAATCAAAAAAG
AATTATATTTGTATGAAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
FLLFVVAVSAQTAPKVATYKGYEFSFYTNEASGKLTYDDAKQVCVDAGARLAEIKSADVQDFITTQLTDLGLVENWSSWAQGYWIGGVCGGGKDNWKWED
.L..V...S..TA..VATYKGYEFSFYTN....K.TYDDAKQ.CVDAGARLAEIKSADVQDFITTQLTDLGLVE..S.W.QGYWIGGVC..G..NWKWED
Retrocopy
YL*IVINMSYLTASNVATYKGYEFSFYTNNEYWKSTYDDAKQACVDAGARLAEIKSADVQDFITTQLTDLGLVESFSNWKQGYWIGGVCESGINNWKWED


Parental protein
GTSIGNGTYQNWFNVASCSLLEPNSNKESDRICLFRFEEGKYNFNTCNETLGKWGDVDKKSNMNWICMK
GTSIG...Y.NWF....C.L.EPN.N....R.....FE.G.Y...TCN..LGKWGD.......N.ICMK
Retrocopy
GTSIGGSNYDNWF--VGCGLSEPNGNGATYRTHILPFEDGNYGSQTCN-ALGKWGDDGXXXXXNYICMK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide