RetrogeneDB ID:
retro_csav_26
Organism:
Ciona savignyi ( Ciona_savignyi )
Location:
reftig_48:2684045-2684873 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
58.89 %
Coverage:
98.26 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
CSA.5848
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_csav_26
TCTGGCTCCGAGGAAGAACAGTCTAGAAAGTTATTTGTTGGTGGCCTAAACCACGATACC
ACCGATGATGGAATGCGGGAATATTTTGCAAAGTACGGGAATATTACCGATTGCGTGGTG
ATCAGAGAACAGGGAACCGACCGCTCGAAAGGATTTGGGTTCGTTACCTTTGAAACCGAG
GTGGAAGCAGATGCGTGTATGGATGAACGACCTCATGTTCTTGATACAAGAAAAATCGAC
GTGAAACGGGCCGTTTCCCGAGAAGAGTCGTCCAAACCAGGTGCTCATACTCAGGTGAAA
AAGATATTTGTTGGAGGTGTTAAAGAGGGTTGCGATGAGCAGACCTTGAGAGAATACTTT
GATAGTTTTTCAAAGAGGTCACTTATACAGTCGGTGGAAATACCATTGGAACGGGATACA
CAGCGTCCAAAGGGCTTTGCGTTTGTAACCTTTGAAGACTTTGACATTGTTGATAAGTTA
GTGGCACGAAGGCATCACGATATTGCTGGGTTTAAATGCCAAGTGAAGAAAGCTCTTTCA
AAGCAGGAGATGGAACGTTCGAAACAAGAACTGGAAACCAAGCAACGATGGTCAGGCAGC
AGGGGTGGAACTGGAAAGGGGGATTACCAATATGGTGGTTATGGTGGTTACGAAGGACAG
GGTCATGGGAATTACCGTCCAATGAGGGGTCAATATGGACAAAGATCTAGTGGTCCATAT
GGGGGTGGGTACGGTAGGGGTGGCTCAAGTAGTGGATATGGGAGTAGGGGTGGTGGCGGT
GGAGGTTATGGGGGTAGGGGAGGAGGGTATAGCAAAAGAGGTGGCGGT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SGSEEEQLRKLFIGGISYETTDESMNDYFSKYGKIEDCVVIKDNSTGRSKGFGFVTFETETEADACMEERPHTLNNRQIDVKRAVSREESAKPGAHFQVK
SGSEEEQ.RKLF.GG....TTD..M..YF.KYG.I.DCVVI....T.RSKGFGFVTFETE.EADACM.ERPH.L..R.IDVKRAVSREES.KPGAH.QVK
Retrocopy
SGSEEEQSRKLFVGGLNHDTTDDGMREYFAKYGNITDCVVIREQGTDRSKGFGFVTFETEVEADACMDERPHVLDTRKIDVKRAVSREESSKPGAHTQVK


Parental protein
KIFIGGLKDGCDESSLKEYF---GKIGSIETFELPLERDSDKPRGFAFITFTDHDTVDKLVAKRHHYVNGVRCEVKKALSKSEMEKAKSQGKTIYFGCGG
KIF.GG.K.GCDE..L.EYF....K...I...E.PLERD...P.GFAF.TF.D.D.VDKLVA.RHH...G..C.VKKALSK.EME..K....T.....G.
Retrocopy
KIFVGGVKEGCDEQTLREYFDSFSKRSLIQSVEIPLERDTQRPKGFAFVTFEDFDIVDKLVARRHHDIAGFKCQVKKALSKQEMERSKQELETKQRWSGS


Parental protein
GGGRGGGSCVFNGFFAGSGGYGGGGGYGDEGGYGSGGGGYGSGSGGGGYGGGSG-AGYGSGYGGYGSGESGYGGASGGGGYSSGYGG
.GG.G.G.....G.....GGY.G.G.....G.Y....G.YG..S..G.YGGG.G..G..SGYG..G.G..GYGG...GGGYS...GG
Retrocopy
RGGTGKGDYQYGGY----GGYEGQG----HGNYRPMRGQYGQRS-SGPYGGGYGRGGSSSGYGSRGGGGGGYGGR--GGGYSKRGGG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide