RetrogeneDB ID:
retro_csav_3
Organism:
Ciona savignyi ( Ciona_savignyi )
Location:
reftig_11:1397711-1399655 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
67.95 %
Coverage:
96.74 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
CSA.971
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_csav_3
ATTCAAGATTTATTTTTGAATAACGATATAATAGAATATTATCGAAAGTTTACAAGAGCA
AAGATGTCAACTGCAGTAGGAATTGATCTGGGAACAACATATTCCTGTGTCGGCGTATTT
CGACATGGTAAAGTGGAGATTATTGCTAATGACCAGGGAAATAGAACAACACCAAGCTAC
GTTGCTTTCAATGAGACAGAAAGAATAATCGGAGATGGAGCAAAAGATCAAGTCGCACGA
AACCCCGAGAACACCATCTTTGACGCGAAGAGACTCATCGGAAGAAATTTCAGCGACCCC
GTTGTTCAGAAAGACATGGAGCACTGGCCGTTTCAAGTGGTCAATAAGAACGGAAAACCT
TTTCTTAAAGCTGAATATCAAGGCCAAGTGAAGACGTTTTCGCCAGAAGAAATCAGCTCA
ATGGTTCTTACGAAGATGAAAGACACGGCAGAGGCCTACCTTGGTGAAAGTGTAAAGGAC
GCTGTCATAACAGTACCAGCTTACTTTAACGATTCACAAAGACAAGCAACCAAAGACGCT
GGAACAATAGCTGGTTTAAATGTGTTGCGAGTCATTAACGAACCAACAGCCGCCGCCCTT
GCATACGGGCTGGATAAAAACCTGTCTGGCGAAAAAAGAGTTCTGATTTTTGATCTTGGA
GGTGGTACCTTTGATGTCTCCGTGCTAAGTATAGATGAAGGATCAATCTTTGAAGTCTTA
TCTACCGCTGGTGACACCCACCTTGGAGGTGAAGACTTCGATAACAGAATGGTGAAGCAT
TTCATGGACGAATTCAAACGAAAGCACAAGAAAGACATTTCAAAAAATAATAGATCCGTG
AGGAGACTGCGCACGGCTTGTGAGAGAGCAAAGAGAGTTCTTTCAACCTCGACCGAAGCA
TCTTTGGAGTTGGAGTCATTGTATGAAGGCATTGATTTCTATAGTAAAATCACTCGTGCA
AGATTCGAGGAAATGTGCTCTGATTTGTTTCGCTCTTGTTTGGATCCTGTGGAGAAAGCA
TTGCGGGATGCCAAGCTTGATAAAATGAAGATTGATGATGTGGTATTGGTTGGAGGATCC
ACTAGAATTCCAAAGATACAAAAATTACTAAGTGACTTCTTTAATGGAAAGAATCTCAAC
AAATCGATTAACCCAGACGAGGCAGTCGCATACGGAGCTGCTATCCAGTCTGCTGTTCTC
ACCGGTAACTCTGGAGTGCAAGATGTTCTTCTAGTAGATGTTGCTCCGCTTTCGTTGGGG
ATTGAAACGGCTGGCGAAGTGATGACAAAACTGGTTGAGAGGAACGCAAGAATTCCTCAC
AGCACATCACAAGTCTTTACCACCTACGCTGACAACCAACCAGCTGTAACTATACAAGTT
TACGAGGGTGAAAGAGCACTGACGAAACACAACAACCTGTTAGGGACCTTTAACCTCTCT
GGAATACCACCCGCACCAAGAGGTGTTCCAAAAATTGAAGTTACTTTCGACATAGATGCC
AACGGTATCTTGCAAGTTTCAGCCAAAGACCAGAGTACCGGCAAAGCGAACAAAATTACC
ATCAACAAAGGTCGGCTATCAAAGGCAGACATCGAATCAATGTTAGCAGATGCTGAAAAA
TATAAAGAAGAAGACAATAAACAGGTAGAACGATTGAAAGCGAGAAACGATTTGGAAAGC
TACATGTACTCGTGCAAGAATGCCGCCGAAGAAGCCGGAGACAAAATATCATCGGACGAC
AGGGAACGAGTGGTGCAAATGTGCAACGAGACGCAAAAGTGGTTGGATGGAAATTCACTC
GCTGAGAAGGAAGAATTCGAAGAGAAAATGAACCAAGTTAAGAAATGTTGTTCACCTGTC
ATGACCAAGTTGCATTCAGCCGCCGGTGGGCAGCAAAGCGCCAGGCAAAACGGTGACGGA
CCAGTTGTGGATGAAGTCGACTAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KEKKMSKAPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVGFSDTERMIGDAAKNQIAMNPTNTIFDAKRLIGRRFDEDTVQSDMKHWPFTVKN
K........A.GIDLGTTYSCVGVF.HGKVEIIANDQGNRTTPSYV.F..TER.IGD.AK.Q.A.NP.NTIFDAKRLIGR.F....VQ.DM.HWPF.V.N
Retrocopy
KFTRAKMSTAVGIDLGTTYSCVGVFRHGKVEIIANDQGNRTTPSYVAFNETERIIGDGAKDQVARNPENTIFDAKRLIGRNFSDPVVQKDMEHWPFQVVN


Parental protein
DSGKPKFEVEYKGDTKTFYPEEISSMILLKMKETAEAYLGKSVTDAVVTVPAYFNDSQRQATKDAGTISGLNILRIINEPTAAAIAYGLDKKVSGDINVL
..GKP....EY.G..KTF.PEEISSM.L.KMK.TAEAYLG.SV.DAV.TVPAYFNDSQRQATKDAGTI.GLN.LR.INEPTAAA.AYGLDK..SG...VL
Retrocopy
KNGKPFLKAEYQGQVKTFSPEEISSMVLTKMKDTAEAYLGESVKDAVITVPAYFNDSQRQATKDAGTIAGLNVLRVINEPTAAALAYGLDKNLSGEKRVL


Parental protein
IFDLGGGTFDVSVLNIDEG-IFEVKSTSGNTHLGGEDFDNRMVDFFCKEFEKKHKKNLRSSKRALRRLRTACERVKRALSSSTQANMEIDSLFEGIDFYT
IFDLGGGTFDVSVL.IDEG.IFEV.ST.G.THLGGEDFDNRMV..F..EF..KHKK......R..RRLRTACER.KR.LS.ST.A..E..SL.EGIDFY.
Retrocopy
IFDLGGGTFDVSVLSIDEGSIFEVLSTAGDTHLGGEDFDNRMVKHFMDEFKRKHKKDISKNNRSVRRLRTACERAKRVLSTSTEASLELESLYEGIDFYS


Parental protein
SVTRARFEELNNDLFRGTLDPVEKALRDAKLEKGKIDEVVLVGGSTRIPRIQKLLSDFFNGKELNKSINPDEAVAYGAAVQAAILSGVKSDVVQDLLLLD
..TRARFEE...DLFR..LDPVEKALRDAKL.K.KID.VVLVGGSTRIP.IQKLLSDFFNGK.LNKSINPDEAVAYGAA.Q.A.L.G.....VQD.LL.D
Retrocopy
KITRARFEEMCSDLFRSCLDPVEKALRDAKLDKMKIDDVVLVGGSTRIPKIQKLLSDFFNGKNLNKSINPDEAVAYGAAIQSAVLTG--NSGVQDVLLVD


Parental protein
VAPLSLGLETAGGVMTPLIKRNSTVPKKETQKFTTYSDNQPGVLIQVYEGERGMTVNNNLLGKFELTGIPPAPRGIPQIEVTFDIDANGILNVSACDIST
VAPLSLG.ETAG.VMT.L..RN...P....Q.FTTY.DNQP.V.IQVYEGER..T..NNLLG.F.L.GIPPAPRG.P.IEVTFDIDANGIL.VSA.D.ST
Retrocopy
VAPLSLGIETAGEVMTKLVERNARIPHSTSQVFTTYADNQPAVTIQVYEGERALTKHNNLLGTFNLSGIPPAPRGVPKIEVTFDIDANGILQVSAKDQST


Parental protein
GKQNKITITNDKGRLSKEEIDRMVNDAEKYKEEDDQQRQRIQAKNNLESYAFNVKSSLEDDKVRDKVTDDDRKAVLDKAKEILDWLDMNQAAGKEEYEHQ
GK.NKITI...KGRLSK..I..M..DAEKYKEED..Q..R..A.N.LESY....K...E.....DK...DDR..V.....E...WLD.N..A.KEE.E..
Retrocopy
GKANKITI--NKGRLSKADIESMLADAEKYKEEDNKQVERLKARNDLESYMYSCKNAAEE--AGDKISSDDRERVVQMCNETQKWLDGNSLAEKEEFEEK


Parental protein
QKELEKVANPVFSKLYQTGGEMPS
.....K...PV..KL....G...S
Retrocopy
MNQVKKCCSPVMTKLHSAAGGQQS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide