RetrogeneDB ID:
retro_csav_30
Organism:
Ciona savignyi ( Ciona_savignyi )
Location:
reftig_55:1111912-1113083 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
74.23 %
Coverage:
57.84 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_csav_30
GAAAAGAATTCGAAATGTGAAATATGTGGAAAATGTTTTCAAAATCGTGATGTTTTGATG
GTTCATTTAAGAACACATACTGGAGAACGACCTTACACATGTGATATATGCAAGAAATCC
TTTAAGCAAAAGGCACACTTAGATACCCACACAAAATTTCATTTTAATAATCGAGAGTTT
AAATGTGGGCTCTGTGAAAAATCGTACAATATAAAATCCAATCTAAATAAACATATGAAG
ACTCATGCTGGAGAGAGAGCGTTTTCGTGTGATGTGTGTGAAAAAACATTTGTTCATGCC
ACCGGATTGAATCTCCACAAGAAACTTCACACTGCTGAAAGGCCATACAAATGCAGTTTG
TGCGAAAAATCTTTTACAAGAAGTCATCATTTGCAAATACATCACATGACTCACACTGGT
CAGATGCCTTATAAATGTGATGTGTGTGAGAAAACCTTCCGACAAAGTAGCAATATGAGG
TCGCACAAAGCAACTCACAACAAAGAAAAAACAATAAAATGTGACATTTGTGAAAATATG
TTTGCTACACAAATACATCTGAATAAACATCGAAAAATTCATTTTGAACGGAATAAAGTC
AAATGCAATGTATGTGAAAAGTCATTCAGCTCTGCTCTTGCCTTGAAAATACACCAACGT
TCACACAGTGGTGATAGGCCGTACAAATGTGAAGTTTGTGATCGAAGCTTTCGTGACGGT
TCACACCTCAAAAAACATAAAACAATTCATACTGGAGAGAAACCTCACAAATGTGATGTT
TGTGGAAAGTCATTTAGAATGATAGGAGATTTAAAAGCACATCAACTGACCCACAGCAAA
GAAAGGCTGTACAAATGTGATGTCTGTGAAAAGTCGTTCCGTCAGAAACCTGGTTTAAAT
TCGCACCGAAAAATCCATGATGGTGTAAAACCGTACAAGGTGTGAAACATGTGGAAAATT
ATTTCGTACAAGTTCAGAGATGAAGAAACACGAAAGGATTCACACCGACGAGAAACCGTT
TACATGTACCATTTGCGAACGTAGCTTTCTTCACTCTAACTCCCTAAAACAACATGAACG
AATTCACACCGGAGAGAAACCTTACAAATGTAACATTTGCGAGAGAATGTTTAATTGTCA
AAGCAACATGACAAAACATCAAGCAAGGCAT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ERPYKCSFCEKSFTRSHHLKIHHMTHTGQMPYKCDVCEKTFRQSSNMRTHKATHNKEKTIKCDVCGNMFATQMHLNKHQKIHSERKRPFSCDVCEKTFVY
E...KC..C.K.F.....L..H..THTG..PY.CD.C.K.F.Q.....TH...H......KC..C.........LNKH.K.H....R.FSCDVCEKTFV.
Retrocopy
EKNSKCEICGKCFQNRDVLMVHLRTHTGERPYTCDICKKSFKQKAHLDTHTKFHFNNREFKCGLCEKSYNIKSNLNKHMKTHAG-ERAFSCDVCEKTFVH


Parental protein
ATGLNLHKKLHTAERPYKCSFCEKSFTRSHHLKIHHMTHTGQMPYKCDVCEKTFRQSSNMRTHKATHNKEKTIKCDVCENMFATQMHLNKHRKIHSERSK
ATGLNLHKKLHTAERPYKCS.CEKSFTRSHHL.IHHMTHTGQMPYKCDVCEKTFRQSSNMR.HKATHNKEKTIKCD.CENMFATQ.HLNKHRKIH.ER.K
Retrocopy
ATGLNLHKKLHTAERPYKCSLCEKSFTRSHHLQIHHMTHTGQMPYKCDVCEKTFRQSSNMRSHKATHNKEKTIKCDICENMFATQIHLNKHRKIHFERNK


Parental protein
FKCNVCEKSYNSALALKIHQRSHSDERPYKCEVCDRSFRDGSVLKKHKTIHTGEKPHKCDVCEKSFRSAGYLKAHQLIHGEDRLYKCDVCEKSFRQRPGL
.KCNVCEKS..SALALKIHQRSHS..RPYKCEVCDRSFRDGS.LKKHKTIHTGEKPHKCDVC.KSFR..G.LKAHQL.H...RLYKCDVCEKSFRQ.PGL
Retrocopy
VKCNVCEKSFSSALALKIHQRSHSGDRPYKCEVCDRSFRDGSHLKKHKTIHTGEKPHKCDVCGKSFRMIGDLKAHQLTHSKERLYKCDVCEKSFRQKPGL


Parental protein
NSHRKIHEGEKPFK-CETCGKLFGTSSQMKKHEKIHTDEKPFTCTICERSFLLSKCLKQHERIHTGEKPYKCDICQRMFSLKCKLNIHMKTH
NSHRKIH.G.KP.K.CETCGKLF.TSS.MKKHE.IHTDEKPFTCTICERSFL.S..LKQHERIHTGEKPYKC.IC.RMF........H...H
Retrocopy
NSHRKIHDGVKPYK\CETCGKLFRTSSEMKKHERIHTDEKPFTCTICERSFLHSNSLKQHERIHTGEKPYKCNICERMFNCQSNMTKHQARH


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide