RetrogeneDB ID:
retro_csav_32
Organism:
Ciona savignyi ( Ciona_savignyi )
Location:
reftig_56:796092-796603 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
68.39 %
Coverage:
59.66 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_csav_32
CTGTTGCTTTTTCTACACTATATCCAACATGTTTTCATTACAGTACCAAAAGTGACAACA
TACAAGGGGTATGAGTTCAGTTTCTACACCAATGAAGCAAGTGGTAAATTAACCTATGAT
GATGCAAAGCAAGTTTGTGTGGATGCTGGTGCTAGATTGGCTGAAATAAAGTCGACTGAT
GTTCAAGACTTTATTACAACTCAACTAACAGACTTGGGTTTGGTAGAAGGTTTTAGTAAC
TGGGCTCAAGGTTATTGGGTTGGTGGAGTGTGTGGGGGTGATTATGGATAATTGGAAATG
GGAAAATGGAACCAATATTGGGGGTAGTAACTATGAAAACTGGTTTGTTGGTTGTGGGAT
CACTGAACCCAATGGTAATAAAGCAGAAAGCAGAGCATATGTTTATCCATTTAAGGAGGG
GAATAATGACGGTCAAACATGCACAGAAACATTGGGAACTTGGGGGGATGATGATAAGTC
CAATATGAAGAACTGGATTTGCATGAAAAGT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LQLFLLFVVAVSAQTAPKVATYKGYEFSFYTNEASGKLTYDDAKQVCVDAGARLAEIKSADVQDFITTQLTDLGLVENWSSWAQGYWIGGVCGGG-KDNW
L.LFL.....V...T.PKV.TYKGYEFSFYTNEASGKLTYDDAKQVCVDAGARLAEIKS.DVQDFITTQLTDLGLVE..S.WAQGYW.GGVCGG...DNW
Retrocopy
LLLFLHYIQHVFI-TVPKVTTYKGYEFSFYTNEASGKLTYDDAKQVCVDAGARLAEIKSTDVQDFITTQLTDLGLVEGFSNWAQGYWVGGVCGGD\MDNW


Parental protein
KWEDGTSIGNGTYQNWFNVASCSLLEPNSNKESDRICLFRFEEGKYNFNTCNETLGKWGDVDKKSNMNWICMKA
KWE.GT.IG...Y.NWF....C...EPN.NK...R.....F.EG.....TC.ETLG.WGD.DK....NWICMK.
Retrocopy
KWENGTNIGGSNYENWF--VGCGITEPNGNKAESRAYVYPFKEGNNDGQTCTETLGTWGDDDKSNMKNWICMKS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide