RetrogeneDB ID:
retro_csav_33
Organism:
Ciona savignyi ( Ciona_savignyi )
Location:
reftig_7:1855546-1855804 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
53.49 %
Coverage:
96.63 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
CSA.5592
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_csav_33
ATGATGTTTAGCCGATTGCTGACAACGTTTAGCCATCAACGGATGCATGTGCGCCAATCT
TCAAGCTTCAACAAGTTCCCAGTTATGAAAGTTCAACCGGTGGGGATCAGCGGAAACTTG
ATGATGGCGATCGGCCTCACAACGCTTGTGGGCTGCATTTGCATGGTGCAACGTTCAGGG
TTTCTCATTCCGCATACTCCGGGTGTGGGTTTCAATTACAAAAAAGTTCATATCGACCTC
ACAAAACCGATAGGGGAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MIGKQFLRLLKVPQMQARNASSFNKFPVMKVKPTGLDGNVMLAIGMTILVATTYVVQKSGYLIPQTPGVGFRYKHLDIDLTTPTSQ
M.....L.......M..R..SSFNKFPVMKV.P.G..GN.M.AIG.T.LV.....VQ.SG.LIP.TPGVGF.YK...IDLT.P...
Retrocopy
MMFSRLLTTFSHQRMHVRQSSSFNKFPVMKVQPVGISGNLMMAIGLTTLVGCICMVQRSGFLIPHTPGVGFNYKKVHIDLTKPIGE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide