RetrogeneDB ID:
retro_csav_34
Organism:
Ciona savignyi ( Ciona_savignyi )
Location:
reftig_77:454990-456121 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
94.46 %
Coverage:
98.95 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_csav_34
ATGTCAAGCAAGTCAAAACTAGACGAAAAGGTTCATGTTGCAGTGCGATGCAGACCCATG
ACAGCTAGTGAGAGGACCAGCAATATAAGAAGGGCCGTGGACTGTAACTCAAAATCCCGC
GAAATCAGTGTCGCCACCCATTCAAACGGCATATCATCCGTGAATACATCAAAATCATAT
CATTTTGACAAGGTGTTTGGCCCAAAAGCTGAACAAATCGATGTCTACAAGAGCGTTGTG
TCAGCTCAGCTCGATGATGTTTTGGCTGGCTATAACTGCACTGTTCTTGCGTATGGACAG
ACGGGCACAGGTAAAACCTACACCATGGAAGGAGAAAGAAGCCCTAGTAAGGATTACACA
TGGGACAATGACCCACGTGCCGGAATTATTCCTCGTGCTCTCAGTCAACTCTTTGATGAG
TTGAATAAGAGTGGTGCAGAATACAGTGTGAGGGTTTCACTGCTAGAAATCTACAACGAA
GAGATCCACGACCTTCTTTCCCCCCTAGCCGAGCAGATTAAAATGAAAATTTATGAAGAC
CACCAAAAGAAAGGACATAGTAAAGTTGTTGTGTCCGGACTTACTGATATTGTCATACGA
AACAAGTCCGATATTTACGATATCTTGCAAAAGGGAGCTATAAAACGAAAAACGGCGGCC
ACTGATCTAAATGAATTCTCCAGCAGATCGCACAGCATCTGCACTGCCATCATCCACACC
AAGGACATCACACATAACAACATGGAAGAAGAAGAATTTGTTAAAATTGGGAAACTAAAT
CTGGTGGACCTGGCAGGAAGCGAGAACATCGGTCGGTCAGGGGCGGTGGAGAAGAGAGCA
CGGGAGGCGGGAAACATCAACACCAGCTTGTTGGCATTAGGAAGATGTATCACTGCGTTG
GTGGAGAAGGCCCCACATGTCCCCTACAGAGAGAGCAAACTCACCCGACTCCTCCAAGAC
TCGCTCGGTGGAAACACGAAGACGTCGATCATCGCAACCATCTCCCCCGGCAGCGACAAT
GTGGAGGAAACACTCAGCACACTTGACTATGCGTACCGAGCCAAGAACATCAACAACAAA
CCACGCGTCAACCAGAAGCTAACCAAGCGTGCTCTTATTAAGGAATATGAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MASKSKLDEKVHVAVRCRPMTASERTSNIRRVVDCNSKSREISVTTHSNGMGLSSANTSKSYHFDKVFGPKAEQIDVYKSVVSAQLDDVLAGYNCTVLAY
M.SKSKLDEKVHVAVRCRPMTASERTSNIRR.VDCNSKSREISV.THSNG...SS.NTSKSYHFDKVFGPKAEQIDVYKSVVSAQLDDVLAGYNCTVLAY
Retrocopy
MSSKSKLDEKVHVAVRCRPMTASERTSNIRRAVDCNSKSREISVATHSNG--ISSVNTSKSYHFDKVFGPKAEQIDVYKSVVSAQLDDVLAGYNCTVLAY


Parental protein
GQTGTGKTYTMEGERSPSEDYTWDNDPRAGIIPRALSQLFDELDKSGAEYSVRVSLLEIYNEEIHDLLSPLAEPIKMKIYEDNQKKG--KVVVSGLTEIV
GQTGTGKTYTMEGERSPS.DYTWDNDPRAGIIPRALSQLFDEL.KSGAEYSVRVSLLEIYNEEIHDLLSPLAE.IKMKIYED.QKKG..KVVVSGLT.IV
Retrocopy
GQTGTGKTYTMEGERSPSKDYTWDNDPRAGIIPRALSQLFDELNKSGAEYSVRVSLLEIYNEEIHDLLSPLAEQIKMKIYEDHQKKGHSKVVVSGLTDIV


Parental protein
IRNKSDIYDILQKGAIKRKTAATDLNEFSSRSHSIFTATIHTKDITQNNMEEEELVKIGKLNLVDLAGSENIGRSGAVEKRAREAGNINTSLLALGRCIT
IRNKSDIYDILQKGAIKRKTAATDLNEFSSRSHSI.TA.IHTKDIT.NNMEEEE.VKIGKLNLVDLAGSENIGRSGAVEKRAREAGNINTSLLALGRCIT
Retrocopy
IRNKSDIYDILQKGAIKRKTAATDLNEFSSRSHSICTAIIHTKDITHNNMEEEEFVKIGKLNLVDLAGSENIGRSGAVEKRAREAGNINTSLLALGRCIT


Parental protein
ALVEKAPHVPYRESKLTRLLQDSLGGNTKTSIIATISPGSDNVEETLSTLDYACRAKNINNKPRVNQKLTKRALIKVSD
ALVEKAPHVPYRESKLTRLLQDSLGGNTKTSIIATISPGSDNVEETLSTLDYA.RAKNINNKPRVNQKLTKRALIK..D
Retrocopy
ALVEKAPHVPYRESKLTRLLQDSLGGNTKTSIIATISPGSDNVEETLSTLDYAYRAKNINNKPRVNQKLTKRALIKEYD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide