RetrogeneDB ID:
retro_csav_35
Organism:
Ciona savignyi ( Ciona_savignyi )
Location:
reftig_83:352166-353313 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
56.44 %
Coverage:
75.05 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_csav_35
AAACCCAACATTGTATTCATCCTGGCCGACGACTTTGGCTTCAACGACATCGGGTACCAT
GCAGTGGAGCACCATTCTGATATGAAGACTCCATTTCTGGATTCCCTGGCAATGTCCGGA
GTAAGGTTGGAGAATTATTACATTCAGCCGATTTGCTCTCCATCTAGAAGTGTCTTAATG
AGCGGAAGGTATCAGATCCACACTGGTTTGCAACATTACGTTATATCTCCCCAACAGAGG
AACGGGCTGCCTTTGGAAAACATTATACTGCCGGAGCAGTTGCATAAATGTGGCTACGAT
ACTCACATGGTTGGGAAATGGCATCTGGGATTCTACAAGGAAGACTTCACCCCTTGGAAA
CGTGGGTTCAATTCCTACTTTGGATATTTGACAGGTGGTGGAAGATTATTACACAAAATG
GAGATGTGATGGAAAATTGTGTGGTTACGATATGTCTTCAGAAAAGGGTCCAACTAATGA
GACTTATGGGAAGTATTCTGCTAACTTATTTGTTGACAAAGCGAAAGAGGCTATAGACAA
AAGAAATACGAACCAACCTTTATTTTTATACGTCGCTTTTCAGTCAGTTCATTCTCCAAT
GGAAGTTCCTGCATCTTATGAAAAACCGTTTGCTTATATTAAAGATAACAACCGAAGAGC
GTATGGTGGTATGGTGGCAGCCATGGATGAAGCTGTTAAAAACATCACACTTCACTTGCA
AGCTGCTGGAATATGGAACAACACACTTTTAATATTTTCAGCAGATAACGGTGGCCAGAC
ACTGTCCGGTGGAAATAATTATCCTCTTAGAGGAAGGAAGCTTACACTTTGGGAAGGTGG
GATCAAAGGTGTTGGATTCGTGCATGGGGAAATGCTTAATGTCCCAAACCCAAATGTTAT
AGTTAATAATGAAATGATGCATATTTCCGATTGGTTTCCCACAATAATGGCTGCAAGTCA
ATGCCCCTATGTAGAAGGCACACAAAAGCTTGACGGTGTTAATCAATGGGATACCATTCT
TGGAAACGCTGTCTCACCCAGAAAAGAAATTCTTCTAAACATAGACCCACTGTTCACGCC
AATGTATTATAACCAAACTCCACGGAAATCTGTCAAAATGGACTTTGATACGTCAGTTCA
CGCAGGA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RPHIVFVLADDFGYNDIGYHAREHCSQMYTPFLDSLAAKGVKLENYYVQPICSPTRGQLLTGRYQIHTGLAHGIIKAAQPYGLPLDNILLSQQLRKCGYK
.P.IVF.LADDFG.NDIGYHA.EH.S.M.TPFLDSLA..GV.LENYY.QPICSP.R..L..GRYQIHTGL.H..I...Q..GLPL.NI.L..QL.KCGY.
Retrocopy
KPNIVFILADDFGFNDIGYHAVEHHSDMKTPFLDSLAMSGVRLENYYIQPICSPSRSVLMSGRYQIHTGLQHYVISPQQRNGLPLENIILPEQLHKCGYD


Parental protein
TNMVGKWHLGFFREEYLPWNRGFQNFFGFLNGG-VNHYTRYHCEPKKTRRFCGYDMIDSRHGPINSTYGEYSTNLFVRKAKEMIDRHNKAKPMFLYLSLQ
T.MVGKWHLGF..E...PW.RGF...FG.L.GG....YT...C..K.....CGYDM..S..GP.N.TYG.YS.NLFV.KAKE.ID..N...P.FLY...Q
Retrocopy
THMVGKWHLGFYKEDFTPWKRGFNSYFGYLTGG\EDYYTKWRCDGK----LCGYDM-SSEKGPTNETYGKYSANLFVDKAKEAIDKRNTNQPLFLYVAFQ


Parental protein
AVHGPLQVPNQYLKRFKHIKDRNRKIYAGMVYAMDRGIRQLVKHLKRVRMWKDTIFIFSTDNGGQTTRGGNNWPLRGKKGTLWEGGIRAVGFVHGKPLQL
.VH.P..VP..Y.K.F..IKD.NR..Y.GMV.AMD........HL.....W..T..IFS.DNGGQT..GGNN.PLRG.K.TLWEGGI..VGFVHG..L..
Retrocopy
SVHSPMEVPASYEKPFAYIKDNNRRAYGGMVAAMDEAVKNITLHLQAAGIWNNTLLIFSADNGGQTLSGGNNYPLRGRKLTLWEGGIKGVGFVHGEMLNV


Parental protein
NGP--MVNHELLHVSDWYPTIMSATQCPLMVGTQNVDGYDQWDTIRKNKISKRTEILHNIDPLHKKLTIGSEYREGFDVSVRAAIRSG
..P...VN.E..H.SDW.PTIM.A.QCP...GTQ..DG..QWDTI..N..S.R.EIL.NIDPL..........R.............G
Retrocopy
PNPNVIVNNEMMHISDWFPTIMAASQCPYVEGTQKLDGVNQWDTILGNAVSPRKEILLNIDPLFTPMYYNQTPRKSVKMDFDTSVHAG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide