RetrogeneDB ID:
retro_csav_4
Organism:
Ciona savignyi ( Ciona_savignyi )
Location:
reftig_207:137123-137633 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
52.7 %
Coverage:
98.01 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_csav_4
ATGGTTGGCTCGGCGTTAAAACGGCTGATGGCTGAATACAAGCAATTATCACTGAACCCA
CCAGAAGGAATCGTTGCTGGACCTATCAATGAGGAAAACTTCTTCGAATGGGAAGCTATG
ATACTCGGCCCTGAAGACACCCCTTTTGAGGGTGGGGTTTTTCGTACGACGCTCAATTTC
CCTACAGATTACCCAATGAGCCCGCCGAAAATGAAATTTGTTTCCGAAATGTTTCACCCT
AACATCTACCCCGACGGACGGGTTTGTATATCAATACTCCATTCACCAGGAGATGACCCG
ATGGGATATGAAACGAGCGCTGAACGCTGGTCTCCCGTCCAAAGTATTGAAAAGATCCTT
CTCTCTGTGATGAGCATGCTTGCAGAACCGAACCCAGAATCCGGCGCGAACGTAGACGCC
TCGAAAATGTGGCGAGATAATCAGGAACAATTCATCAAACATGCAGAGAAACTTGTTCGA
AAGTCGCTAGATTTACCAGAGAATTTATAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ELQKNPVDGFSAGLVDENNIYKWEVLIIGPVDSLYEGGYFKAHLTFPEEYPQRPPKLKFISEMWHPNVGKDGFVCISILHEPGDDKFGYEKAAERWLPVH
.L..NP..G..AG...E.N...WE..I.GP.D...EGG.F...L.FP..YP..PPK.KF.SEM.HPN...DG.VCISILH.PGDD..GYE..AERW.PV.
Retrocopy
QLSLNPPEGIVAGPINEENFFEWEAMILGPEDTPFEGGVFRTTLNFPTDYPMSPPKMKFVSEMFHPNIYPDGRVCISILHSPGDDPMGYETSAERWSPVQ


Parental protein
TVETIMVSTISMLCDPNDESPANVDAAKQFREDKHKFKKQVARCVRLS
..E.I..S..SML..PN.ES.ANVDA.K..R.....F.K.....VR.S
Retrocopy
SIEKILLSVMSMLAEPNPESGANVDASKMWRDNQEQFIKHAEKLVRKS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide