RetrogeneDB ID:
retro_csav_5
Organism:
Ciona savignyi ( Ciona_savignyi )
Location:
reftig_55:512568-513441 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
73.82 %
Coverage:
95.42 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_csav_5
CTAATAAACCAAGTTATGCAAGAGGCCCAACCGAATTACGAAGCAAAACCGATGAATAAC
CAAACGGCAAATGTTAGATTTGATCAGAAGGATTCTGGTGGTGTGAATTTGTGTGGTGGG
ATATTGATGTTTTTTGCCTGTATTTTGATTCTTGCTACATTACCATTAAGCATTTGGAAC
TGCATCAAAATGGTTCAAGAGTATGAACGGGCAGTAATATTTCGACTTGGACGCTTGGTA
TCCGGTGGTGCCAAAGGTCCCGGAATTTTCTTCATAATTCCTTGCACCGATGAATACCGC
AAAGTCGACATGCGAACAAAATCGTTCGACGTCCCACCGCAAGAAATTCTAACGAAAGAT
AGTGTTACAGTCGCAATGGACGCAGTGGTATACTACAGGGTCTTTGATGCGACCATGGCA
GTTGCAAATGTCGAAAATGTGGACGGTGCAACCCGTCTACTGGCGCAAACAACGTTGCGT
AATATGCTTGGAACGCGAAGCCTAACAGAAATCCTTACTGGGCGCGACCACATCACCCAT
GAAATGATGAGCAGCCTCGACCAAGCAACTGACGTGTGGGGTATCAAAGTGGAGAGGATT
GAAATCAAGGATGTTCGTCTTCCGGTGCAACTTCAACGAGCAATGGCTGCCGAGGCTGAG
GCTTCGAGAGAAGCTCGGGCAAAGGTAATTGCAGCCGAAGGAGAAATGAACGCATCTAAG
AAACTAAAAGAAGCTGCGGATATAATGGCTGGCGCACCGAACGCAATGCAATTGAGGTAT
CTTCAAACCCTCACCGCCATAAGTGCCGAGAAAAATTCGACCATCGTGTTTCCCCTTCCT
ATTGACATGATTGCATCCGCTCTAAAGAAGTAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QPYNNQI-NTSGDDADYG---CCGICLLILSGFIILLTFPVAICMCVKVVQEYERAVIFRLGRLSKGGAKGPGIFFVIPCTDEYRKVDLRTVSFDVPPQE
.P.NNQ..N...D..D.G....CG..L.......IL.T.P..I..C.K.VQEYERAVIFRLGRL..GGAKGPGIFF.IPCTDEYRKVD.RT.SFDVPPQE
Retrocopy
KPMNNQTANVRFDQKDSGGVNLCGGILMFFACILILATLPLSIWNCIKMVQEYERAVIFRLGRLVSGGAKGPGIFFIIPCTDEYRKVDMRTKSFDVPPQE


Parental protein
ILTKDSVTISVDAVVYYRVQDATMSIANVENADGATRLLAQTTLRNMLGTKSLSEVLTDREEISAGMQATLDIATDPWGIKVERVEIKDVRLPVQLQRAM
ILTKDSVT...DAVVYYRV.DATM..ANVEN.DGATRLLAQTTLRNMLGT.SL.E.LT.R..I...M...LD.ATD.WGIKVER.EIKDVRLPVQLQRAM
Retrocopy
ILTKDSVTVAMDAVVYYRVFDATMAVANVENVDGATRLLAQTTLRNMLGTRSLTEILTGRDHITHEMMSSLDQATDVWGIKVERIEIKDVRLPVQLQRAM


Parental protein
AAEAEAARDARAKVIAAEGEMNASRKLKEAADVMSESPNSMQLRYLQTLTAISAEKNSTIIFPLPIDMVTSLMTK
AAEAEA.R.ARAKVIAAEGEMNAS.KLKEAAD.M...PN.MQLRYLQTLTAISAEKNSTI.FPLPIDM..S...K
Retrocopy
AAEAEASREARAKVIAAEGEMNASKKLKEAADIMAGAPNAMQLRYLQTLTAISAEKNSTIVFPLPIDMIASALKK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide