RetrogeneDB ID:
retro_csav_6
Organism:
Ciona savignyi ( Ciona_savignyi )
Location:
reftig_37:644056-644671 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
63.73 %
Coverage:
90.19 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
CSA.4391
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_csav_6
TCATATGAAAGTCATCTTCTCCAGTCCACCAAAGCCCAGATCTCAAAACCCGCTCCAAAA
TGGGAGGGCACTGCCATTGTAGAGGGTGAAATTAAAACCATTAAGCTGACTGATTACTTG
GGAAAATACCTAGTGTTCTTCTTTTACCCTCTTGATTTCACCTTTGTATGCCCGACAGAA
ATCATTGCGTTCTCGGACCGGATTGAGGAGTTTAGAAAAATGAATGTTGAAGTTGTTGCC
GCTTCAGTTGACTCTCACTTCACACATCTCGCATGGCTTAACACTCGCCGCTCCGAAGGT
GGTCTTGGAAAGCTGAATATTCCCCTTCTCTCCGATCTCACCCATAAAATCTCTCGAGAT
TACGGAGTCCTCTTGGAGGACCTCGGACACACTCTCCGTGGACTCTTCATCATCGACCCA
AAAGGAGTCCTCCGTCAAATCACGATGAACGATCTTCCCGTCGGTAGGTCCGTGGACGAA
ACCATTAGATTGGTCCAAGCGTTCCAACACACTGATGAACACGGTGAGGTTTGCCCCGCT
GGATGGGAGCCCGGCAAAGATACCATCATCCCAGACCCTAAGGACAAGCTCAAGTACTTC
AGCAAAACTTCAAAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ASVTQPAPDFKGTSVINGEFKEICLKDYLGKYLVLFFYPLDFTFVCPTEIISFSERSGEFEKCDTSVVGVSVDSHFSHLAWINTPRKEGGLGPMKIPLLS
A....PAP...GT....GE.K.I.L.DYLGKYLV.FFYPLDFTFVCPTEII.FS.R..EF.K....VV..SVDSHF.HLAW.NT.R.EGGLG...IPLLS
Retrocopy
AQISKPAPKWEGTAIVEGEIKTIKLTDYLGKYLVFFFYPLDFTFVCPTEIIAFSDRIEEFRKMNVEVVAASVDSHFTHLAWLNTRRSEGGLGKLNIPLLS


Parental protein
DLTKSVSKDYGVLLEKAGIALRGLFIIDDKGTIWHASVNDLPVGRSVDEVLRLVQAFQFVDKHGEVCPASWTPGSKTIKPSIEGSKKYFESSN
DLT...S.DYGVLLE..G..LRGLFIID.KG.......NDLPVGRSVDE..RLVQAFQ..D.HGEVCPA.W.PG..TI.P......KYF....
Retrocopy
DLTHKISRDYGVLLEDLGHTLRGLFIIDPKGVLRQITMNDLPVGRSVDETIRLVQAFQHTDEHGEVCPAGWEPGKDTIIPDPKDKLKYFSKTS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide