RetrogeneDB ID:
retro_csav_8
Organism:
Ciona savignyi ( Ciona_savignyi )
Location:
reftig_77:2569098-2570280 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
64.24 %
Coverage:
92.97 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
CSA.10126
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_csav_8
ATATTTTTTATTTTCGCCATGAAAGTAGCTTTCGTTTTGCTGTCTGTCCTTCTGGCTTTC
GCAGCTGGCAAGGTAATCAAGCTAAAAAAGATGAGATCTATCCGTCAGGACATGCGTGAC
AAGAATACCGACCTTTCCGCCATTATCCCGCCCCGTTACGTCCGTTTTATCGCAAGAAAC
GGTGCCCCGGAACCCCTCACAAACTACTTGGACGCACAGTACTACGGTGATATCACGATA
GGGACCCCGCCCCAAACCTTCACTGTGGTGTTTGATACCGGGTCCTCGAACCTTTGGGTC
CCCTCTGTAAAATGCTCTATTACAGATGTTGCATGTTTGATCCATGATAAGTACAAGTCT
GGCTCTTCGTCAACATACATCGCAAATGGCACGACCTTCGCGATCCAGTATGGCAGTGGA
AGCCTTTCGGGCTTTGTAAGTAGCGACACGGTCATAATTGGTGGAATCGTAAGCAAAAAT
CAGTTGTTCGCCGAAGCTACAAAGGAACCAGGTCTGACGTTTGTTGCAGCTAAATTCGAC
GGCATTTTAGGAATGGGTTACCCAGAGATCTCCGTCAATGGAATTCTTCCTGTTTTCAAT
CAAATGTTCAAACAAGGAGCTGTGGCTAAGAATCAGTTCTCATTCTACTTGAACCGAGAC
CCAAATGCGGCTAGTGGCGGTGAGCTTTTCCTTGGAGGAGTGGACACGGCACGCTTCACT
GGGAATTTCTCCTACCATCCAGTGACAGTAAAGGGCTACTGGCAGATACAGATGGACAGT
GTTAACGTGGGAAGTGCGCAAAGTGCATGTGTAGGAGGGTGCAAGGCGATCGTCGATTCC
GGTACATCTCTGCTTGCGGGACCTTCTACCGAAATCGCCAAAATCAACAAACTAATCGGA
GCTACATCATTCCTGCATGGAGAGTATGTCGTTCCGTGCAGTTCCATTCCAACCCTCCCG
GATATCACTTTCATGCTCAGCGGGAAGAAGTACGTCCTCACGGCCAAGGATTATGTGATG
CAGGAGTCCGCTGGAGGCGAGAGCATTTGCATCTCCGGCTTCATGGGTCTCGACATCCCC
GCCCCAAGAGGCCCGTTGTGGATCTTGGGTGACATCTTTATGGGGAAGTTCTACACCACG
TTCGATTTCGCCAACAACCGGGTCGGATTCGCCACTTTGAGA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KYTPSFGRSTSNEPLTNYLDAQYFGEIAIGTPEQKFTVIFDTGSSNLWIPSATCPSNNYACLLHNKYDSTASSTYVADGDNFAIQYGTGSMVGFESVDTV
.Y.....R....EPLTNYLDAQY.G.I.IGTP.Q.FTV.FDTGSSNLW.PS..C.....ACL.H.KY.S..SSTY.A.G..FAIQYG.GS..GF.S.DTV
Retrocopy
RYVRFIARNGAPEPLTNYLDAQYYGDITIGTPPQTFTVVFDTGSSNLWVPSVKCSITDVACLIHDKYKSGSSSTYIANGTTFAIQYGSGSLSGFVSSDTV


Parental protein
KIAGIPSTNQVFAEATEEPGITFVAAKFDGILGMGYPTISVNGIKPVFNQMYEQGAVDKNQFAFYLNRDPTGEEGGEICLGGVNEARYTGEFNYHSVTRK
.I.GI.S.NQ.FAEAT.EPG.TFVAAKFDGILGMGYP.ISVNGI.PVFNQM..QGAV.KNQF.FYLNRDP....GGE..LGGV..AR.TG.F.YH.VT.K
Retrocopy
IIGGIVSKNQLFAEATKEPGLTFVAAKFDGILGMGYPEISVNGILPVFNQMFKQGAVAKNQFSFYLNRDPNAASGGELFLGGVDTARFTGNFSYHPVTVK


Parental protein
GYWQLKMDSVAVADADATAACVGGCQIIVDSGTSLITGPTVDTDAINHAIGAIRFVQGEYLVICRNIPNMPDITFVLDGIEYVLTPDDYVLKITQDGVTQ
GYWQ..MDSV.V..A....ACVGGC..IVDSGTSL..GP......IN..IGA..F..GEY.V.C..IP..PDITF.L.G..YVLT..DYV......G...
Retrocopy
GYWQIQMDSVNVGSAQ--SACVGGCKAIVDSGTSLLAGPSTEIAKINKLIGATSFLHGEYVVPCSSIPTLPDITFMLSGKKYVLTAKDYVMQESAGGESI


Parental protein
CLSAFMGMDIPEPTGPLWILGDAFMGKYYTSFDFDTDQVGFAKL
C.S.FMG.DIP.P.GPLWILGD.FMGK.YT.FDF....VGFA.L
Retrocopy
CISGFMGLDIPAPRGPLWILGDIFMGKFYTTFDFANNRVGFATL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide