RetrogeneDB ID:
retro_csav_9
Organism:
Ciona savignyi ( Ciona_savignyi )
Location:
reftig_77:3224224-3224974 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
58.61 %
Coverage:
94.02 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
CSA.5346
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_csav_9
GTTTCAAATATTGTAATAAAAATGACTCAATCTAAAGAAGAGCTTGTTGCCAGCGCCCGG
CTTGCCGAGCAAGCGGAGAGGTATGAAGACATGGTAGCTGAAATGAAGAAATTTCTGGAG
TTGGACGCAAACTTAACAACGGAAGAACGGAACCTACTTTCAGTTGCATTTAAAAACGTG
ATCGGCGCTCGCAGGTCTTCGTGGAGAATTATCAATAGTATCGAGCAGAAGGATAAAGAC
AAGGGAAAGCCGACCGATATTGTTGAAGCCTACAGGGAAAAAATAGAGTCGGAGTTGCAA
ACCTGGTGCCAGGAAGTGATTCAACTTCTGGAAACGAAACTGATCCCGGCATGCAACACT
GCCTCCGATCAGCACGAGGCTTCAGTCTTCTACAGAAAAATGAAGGGCGATTACTACAGG
TACATGGCAGAGTTCATTGAAAACAAGGAGGATGTCGTTAAATCAAGTCTGGATGCGTAC
GACGAGGCGAAAGACGTTTCAGAGGCACATCTGAAACCAACGAATCCTATACGTCTTGGG
CTGGCGCTGAACTTCTCTGTCTTTTACTATGAGATCAAAGGCGATCAAACAAAAAGGGCG
TGCGAGCTCGCCAAGACTGCCTTCGACGCTGCGATTGCTGAACTGGACCAGCTACCAGAA
GATTCGTACAAAGACTCGACCCTGATCATGCAGCTCCTTCGTGACAACCTCACCCTTTGG
ACGTCGGACGCATCTGGGGACCAGGAAGAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SDKREDIVYRAKLAEQAERYDEMVAEMKSVAKLGVELSVEERNLLSVAFKNVIGARRASWRIISSIEQKEE---KNNEMISAYKKKVEDELKKICTDILD
....E..V..A.LAEQAERY..MVAEMK....L...L..EERNLLSVAFKNVIGARR.SWRII.SIEQK.....K......AY..K.E.EL...C.....
Retrocopy
TQSKEELVASARLAEQAERYEDMVAEMKKFLELDANLTTEERNLLSVAFKNVIGARRSSWRIINSIEQKDKDKGKPTDIVEAYREKIESELQTWCQEVIQ


Parental protein
LIKTFLIPNSVNAESK----VFYFKMQGDYHRYLAEFETGSDRKDAAEKSLVSYKGAEEVAQTELAPTHPIRLGLALNFSVFYYEIL-NSPDRACRLAKT
L..T.LIP....A.......VFY.KM.GDY.RY.AEF.......D....SL..Y..A..V....L.PT.PIRLGLALNFSVFYYEI......RAC.LAKT
Retrocopy
LLETKLIPACNTASDQHEASVFYRKMKGDYYRYMAEFI--ENKEDVVKSSLDAYDEAKDVSEAHLKPTNPIRLGLALNFSVFYYEIKGDQTKRACELAKT


Parental protein
AFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQGETEE
AFD.AIAELD.L.E.SYKDSTLIMQLLRDNLTLWTSD..G..EE
Retrocopy
AFDAAIAELDQLPEDSYKDSTLIMQLLRDNLTLWTSDASGDQEE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide