RetrogeneDB ID:
retro_dmel_15
Organism:
Drosophila melanogaster ( Drosophila_melanogaster )
Location:
2L:2768644-2769565 (-)
Status:
KNOWN_PROTEIN_CODING
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
62.76 %
Coverage:
96.66 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
CG3476
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_dmel_15
ATGACCACCACGGAGAACGTGTCCACGGAGCGCAAAGCGAATCCAGTGAAGTCCTTCCTG
ACCGGCGGATTCGGTGGGATCTGCAATGTGCTCTCTGGCCATCCGCTGGACACCATCAAG
GTGCGCCTGCAGACCATGCCGCGTCCGGCGCCGGGTGAGCAGCCCCTGTACCGCGGCACC
TTCGACTGTGCGGCCAAGACGATCAAAAATGAGGGCGTCCGCGGTCTGTACAAGGGCATG
TCCGCACCGTTGACGGGCGTTGCTCCGATCTTTGCGATGTGCTTCGCCGGCTATGCGCTG
GGCAAGCGGCTGCAGCAGCGCGGCGAGGACGCCAAGCTGACCTACCCGCAAATCTTCGTG
GCCGGCTCCTTCTCCGGCCTGTTCTCCACCCTGATAATGGCACCCGGCGAGCGCATCAAG
GTGCTCCTGCAGACGCAGCAGGGTCAGGGTGGCGAGCGCAAGTACAACGGCATGATCGAC
TGCGCCGGCAAGCTATACAAGGAGGGTGGACTTCGCAGCGTTTTCAAGGGCAGCTGCGCC
ACAATGCTCAGGGATTTGCCCGCCAACGGGCTGTACTTCCTGGTCTACGAGGCGCTGCAG
GATGTGGCCAAGTCGAAGTCAGAGACGGGACAAATCAGTACTGCCTCAACGATTTTCGCA
GGTGGAGTGGCGGGCATGGCCTACTGGATTCTGGGCATGCCAGCCGACGTGTTAAAGAGC
CGCCTACAATCGGCTCCCGAAGGCACCTACAAGCACGGCATACGCAGTGTCTTCAAGGAT
CTGATTGTCAAGGATGGACCTCTGGCCTTGTACCGCGGCGTGACGCCCATCATGCTCCGA
GCCTTCCCAGCCAACGCTGCCTGCTTCTTCGGCATTGAGTTGGCTAACAAATTCTTTAAC
ATCGTAGCTCCAAATTTCTAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ISTEKKSNPVKSFIAGGVGGMCNVLVGHPLDTIKVRLQTMPTPPPGQPPRYKGVIDCAARTFRYEGFRGFYRGISAPLVGVTPIYAVDFAVYAAGKRLFQ
.STE.K.NPVKSF..GG.GG.CNVL.GHPLDTIKVRLQTMP.P.PG..P.Y.G..DCAA.T...EG.RG.Y.G.SAPL.GV.PI.A..FA.YA.GKRL.Q
Retrocopy
VSTERKANPVKSFLTGGFGGICNVLSGHPLDTIKVRLQTMPRPAPGEQPLYRGTFDCAAKTIKNEGVRGLYKGMSAPLTGVAPIFAMCFAGYALGKRLQQ


Parental protein
TDDHIRLTYPQIFAAGALAGVCSALVTVPTDRIKVLLQTQTVSNGPLLYNGTIDTAAKLYRQGGIRSLFKGTCACILRDSP-TGFYFVTYEFLQELARKK
......LTYPQIF.AG...G..S.L...P..RIKVLLQTQ....G...YNG.ID.A.KLY..GG.RS.FKG.CA..LRD.P..G.YF..YE.LQ..A..K
Retrocopy
RGEDAKLTYPQIFVAGSFSGLFSTLIMAPGERIKVLLQTQQGQGGERKYNGMIDCAGKLYKEGGLRSVFKGSCATMLRDLPANGLYFLVYEALQDVAKSK


Parental protein
SANGKISTTSTILSGGTAGIVFWTLAVPFDVLKSRLQSAPEGTYKHGIRSVFRNLMATEGPKALFRGILPILLRAFPSTAAVFFGVELTN
S..G.IST.STI..GG.AG...W.L..P.DVLKSRLQSAPEGTYKHGIRSVF..L....GP.AL.RG..PI.LRAFP..AA.FFG.EL.N
Retrocopy
SETGQISTASTIFAGGVAGMAYWILGMPADVLKSRLQSAPEGTYKHGIRSVFKDLIVKDGPLALYRGVTPIMLRAFPANAACFFGIELAN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide