RetrogeneDB ID:
retro_dmel_16
Organism:
Drosophila melanogaster ( Drosophila_melanogaster )
Location:
3R:12964828-12966760 (+)
Status:
KNOWN_PROTEIN_CODING
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
74.64 %
Coverage:
95.32 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
CG1041
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_dmel_16
ATGAAGTTCCGTGACAATGGAAAGGTCCTTTGGAATTTCGCAAGGATATCGGCTCTGCAA
CAGACTCGATATACGTTCGGCAAAAAAATGCCAATTGCCAGCTATAGCACTGCCAAGGAT
AAGCCTAAATCCGATCAGCCAAACCTTCTAAAGTATCATGTCTTACCTCTTGAAGAAATC
CTCAACCGCTTCATGATTACCGTACAACCATTGCTGACACCCGAGGAGTTCAAAAAGCAA
GAGAAGATTACTAACGAATTCCAGAGGAAGGAGGGCGCTAAGCTACAAAAGCTCCTCGAA
GAAACTGGTGAACAGGAGAAGAACTGGTTAGCCCATCGCTGGCTGAAGGTTGCCTACTTA
CAGTTTCGGTCGCCAGTGACTTGCTTCTCCAGTCCCGGCATGACCTTTCCCAAACAGAAA
TTTGAAAGTGTCCACGAATTTGTGGACTACACGTCTAGGGTTATCTTCGGTTTGGGTGAG
TTCAATGACTTGGTGCACGCCAAAAAGATTCCGATTGTGAAAATGGGCAAGAACGAGCTG
GACAACAGTCAGTTTGGAAAGGTTTTCGGCACATGCCGGATACCGAGAAGGTTTACCGAC
GATATCGTCTACAATCCGTGCTCTGATTATGTGGTGGTTATCTACCGGAATCACTTTTAT
CAACTGAAAATATACGACAAGGAAGGAAAGCTTATAATTGCACCATGTCTGGCTGTTCAA
CTGGAGGAAATAATGGCAAAGGAAAAGGAACCGGGAGTTCCTTATGGAATCTTGACCACC
GATTCGCGGGACAACTGGGCCGAGGCATACGAACACTTGTCAAATACGCCCCGTAATAGA
GTTGCCCTGAAAACCATTCAGAATGCTATGTTCACAGTGTCCCTCGACGAGTGTACCAGT
CCAAAAGAAGGTCGAGATGCCGAAGAATTGATCCTTACGCTGATCCATGGAAAGGGCAGC
AAGTGCAACAGTGCCAACCGCTGGATGGATAAGACAATTCAATTGGTGGTAAACCCAAAT
GGACACGTTGGATTCACCTATGAGCACTCACCAGCCGAGGGCCAACCGATCGCAATGATG
ATGGACTATGTAGTGAAGAAGATGAAGGATGACCCTAGTTATGGGGAATGCGGATCGGAA
AACTTTATTCCAGCGAAGAAAATAAAGTTCTGTGATGTAAGCAAATGCGTGGAGCAATGG
TTGATAATCGCGCAAAAAAACGTGGACAAACTTGTCCAGGACCTGCAAATGAAGGTTCTT
AAGTTCGATTGCTACGGCAAGGATTTCATCAAGAAACAGCGACTTGGTCCAGATAGCTTT
GTTCAGATGGCATTGCAGTTGGCATTCTTTAAATTGCACTATGAGCCAGCTGCTCAATAT
GAATCGGCGCATTTGCGCATCTTCGATGGCGGCCGAACCGAAACCATCCGTTCGTGCTCC
AATGAATCCCTGGCTTTTTGCCACGCCATGGATGATGTGAGTGCATCAGCTCAGGAGCGG
GCTAGTAAGATTCGCGAGGCAGTGATGTGCCATCAGATGTATGCGAAGCTGGCGCTTCTG
GGAAAGGGTGTCGATCGTCACCTCTTTGGACTTAAACTAATGGCGGTGGAGAACTGCCTA
CCTGTTCCGGAGTTCTTCTCTTCGCCAGGATATGTAAAGTCCACGCACTTTCGAATGTCC
ACTTCGCAGGTGGCCACCAAATATGATGCCTTCATGGGATATGGACCTTCTGTAGAAGAT
GGATATGCCTGTTGCTACAATCCCCGTGAACATGACATCATTTTGGCCATATCCGCATGG
CGACATTGTCAGGCAACTGATCACCAAAAGATCGCCAAGGCGCTTGCGCAGTCCTTTGCT
GAAATGAAGGATGTACTTGAAACATGTCCAGCTTCAAAAGACAAGCCGCCAGAGCTTAAG
TGCAAGTATTGA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MKFRGNGKLLWNLTKNSLAQQSPNGIAKKVLPASSYSTVQKTIPLEQPNLLKYHVLPLEETLNRFMTTVEPLLTPEEFQRQKGITSEFLKKQGRELQLLL
MKFR.NGK.LWN....S..QQ......KK..P..SYST........QPNLLKYHVLPLEE.LNRFM.TV.PLLTPEEF..Q..IT.EF..K.G..LQ.LL
Retrocopy
MKFRDNGKVLWNFARISALQQTRYTFGKK-MPIASYSTAKDKPKSDQPNLLKYHVLPLEEILNRFMITVQPLLTPEEFKKQEKITNEFQRKEGAKLQKLL


Parental protein
EETGSKEKNWLAHRWLKAAYLTYRDPVTVFVSPGMTFPKQNFRDSRAFVDYTARVIYGLGEFNDMVHANKIPIVKMGKNELDNSQFGKVFGTCRIPRRGT
EETG..EKNWLAHRWLK.AYL..R.PVT.F.SPGMTFPKQ.F.....FVDYT.RVI.GLGEFND.VHA.KIPIVKMGKNELDNSQFGKVFGTCRIPRR.T
Retrocopy
EETGEQEKNWLAHRWLKVAYLQFRSPVTCFSSPGMTFPKQKFESVHEFVDYTSRVIFGLGEFNDLVHAKKIPIVKMGKNELDNSQFGKVFGTCRIPRRFT


Parental protein
DEIVYNPDSDYVVVIYKNHFYQLKIYSKEGKLIAAPCLAAQLENIVLKETQVGVPYGILTTDSRDNWAEAYEYLVETPGNRDALKTIQGALFTVSLDEGT
D.IVYNP.SDYVVVIY.NHFYQLKIY.KEGKLI.APCLA.QLE.I..KE...GVPYGILTTDSRDNWAEAYE.L..TP.NR.ALKTIQ.A.FTVSLDE.T
Retrocopy
DDIVYNPCSDYVVVIYRNHFYQLKIYDKEGKLIIAPCLAVQLEEIMAKEKEPGVPYGILTTDSRDNWAEAYEHLSNTPRNRVALKTIQNAMFTVSLDECT


Parental protein
ILKEGEETDELILSLIHGSGSKINSGNRWMDKTIQLVVNPNGNVGFTYEHSPAEGQPIAMMMDYVVQKMKEDPSFGQSGSQDFAPAQKIQFSSSNKSLEK
..KEG....ELIL.LIHG.GSK.NS.NRWMDKTIQLVVNPNG.VGFTYEHSPAEGQPIAMMMDYVV.KMK.DPS.G..GS..F.PA.KI.F....K..E.
Retrocopy
SPKEGRDAEELILTLIHGKGSKCNSANRWMDKTIQLVVNPNGHVGFTYEHSPAEGQPIAMMMDYVVKKMKDDPSYGECGSENFIPAKKIKFCDVSKCVEQ


Parental protein
SLNVAQENVDKLADALQMKVLKFNGFGKDFIKKQRLGPDSFVQMALQLAFYKMHSEPPAQYESAHLRIFDGGRTETIRSCSNESLAFSRAMQDPNVTDQE
.L..AQ.NVDKL...LQMKVLKF...GKDFIKKQRLGPDSFVQMALQLAF.K.H.EP.AQYESAHLRIFDGGRTETIRSCSNESLAF..AM.D.....QE
Retrocopy
WLIIAQKNVDKLVQDLQMKVLKFDCYGKDFIKKQRLGPDSFVQMALQLAFFKLHYEPAAQYESAHLRIFDGGRTETIRSCSNESLAFCHAMDDVSASAQE


Parental protein
RAAKLREAVVSHQTYAKLALQGKGVDRHLLGLKLMALEHSKPIPEFFKSPGFVKSSHFRMSTSQVATKYDAFMGYGPATDDGYACCYNPRDNDIILAISA
RA.K.REAV..HQ.YAKLAL.GKGVDRHL.GLKLMA.E...P.PEFF.SPG.VKS.HFRMSTSQVATKYDAFMGYGP...DGYACCYNPR..DIILAISA
Retrocopy
RASKIREAVMCHQMYAKLALLGKGVDRHLFGLKLMAVENCLPVPEFFSSPGYVKSTHFRMSTSQVATKYDAFMGYGPSVEDGYACCYNPREHDIILAISA


Parental protein
WRHCPITDHLKFVKTLEQSFFEMKNVLEKNP
WRHC..TDH.K..K.L.QSF.EMK.VLE..P
Retrocopy
WRHCQATDHQKIAKALAQSFAEMKDVLETCP


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide