RetrogeneDB ID:
retro_dmel_3
Organism:
Drosophila melanogaster ( Drosophila_melanogaster )
Location:
2L:10736375-10736957 (-)
Status:
KNOWN_PROTEIN_CODING
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
71.14 %
Coverage:
93.71 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
Vha16-1
Parental gene aliases:
No gene alias available
Parental gene description:
Vacuolar H[+] ATPase subunit 16-1 [Source:FlyBase gene name;Acc:FBgn0262736]

Genomic region (view in browser)





>retro_dmel_3
ATGGAAATGGATTACTATCTGCCAGTGTATAACGGATCAAATTCGGTGGACGTGCCGGGG
CTGATTGAAAGTCTCAAGCTGAAGGAAACCAGTATATCGCCAATCGTGCTGGATCGCTAT
CCGCCGTACTCCCCGTTCTATGGCGTGATGGGCGTCGTATTCTCCAGTGTGCTGACCTCC
GCTGGAGCGGCCTACGGAACTGCTGTTTCCGGAACTGGAATCGCCGCCACAGCGGTGATG
CGTCCCGAGCTGGTGATGAAGTCCATCATTCCGGTGGTCATGGCGGGCATCATTGCCATA
TACGGTCTGGTGGTATCCGTGCTCCTATCTGGGGAACTAGCGCCTGCTCCCAAATACTCG
CTGCCCACCGGCTATGTACACCTGGCCGCTGGACTTTCGGTGGGATTTGCTGGACTGGCT
GCCGGATATGCAGTGGGTGAAGTCGGCGAAGTGGGCGTGCGGCACATTGCCCTGCAGCCA
CGCCTCTTTATCGGCATGATCCTGATCCTTATTTTCGCCGAGGTGCTCGGTCTCTACGGC
CTGATCATTGGGATTTATTTGTACACGGTCAACATTAAGTAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
PIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGALEEPSKYSLYRGFIHLGAGLAVGFSGLA
P.Y.PF.GVMG..........GAAYGTA.SGTGIAA..VMRPEL.MKSIIPVVMAGIIAIYGLVV.VL..G.L....KYSL..G..HL.AGL.VGF.GLA
Retrocopy
PPYSPFYGVMGVVFSSVLTSAGAAYGTAVSGTGIAATAVMRPELVMKSIIPVVMAGIIAIYGLVVSVLLSGELAPAPKYSLPTGYVHLAAGLSVGFAGLA


Parental protein
AGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYT
AG.A.G.VG..GVR..A.QPRLF.GMILILIFAEVLGLYGLI..IYLYT
Retrocopy
AGYAVGEVGEVGVRHIALQPRLFIGMILILIFAEVLGLYGLIIGIYLYT


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide