RetrogeneDB ID:
retro_dmel_32
Organism:
Drosophila melanogaster ( Drosophila_melanogaster )
Location:
X:12267277-12268312 (+)
Status:
KNOWN_PROTEIN_CODING
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
56.68 %
Coverage:
99.11 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
CkIalpha
Parental gene aliases:
No gene alias available
Parental gene description:
Casein kinase Ialpha [Source:FlyBase gene name;Acc:FBgn0015024]

Genomic region (view in browser)





>retro_dmel_32
ATGGAACGACTGCGCTCCTCCCAAAACCGCGAAGTGCGAATCGGCAACTATAAGGTGGTG
CGCAAGATCGGCTGTGGATCCTTCGGCGATATATATCTGGGCATCTATATCCACAGTGGG
GAGCGGGTGGCCATCAAGGTGGAAAGCAGCAAGGTGCGCCATCCGCAGCTCAACTACGAG
AGGCGAATCTACCGCGCCCTGAGGCCCGCCCACGGTTTGCCAAGGATTAGGTACTTCCAC
AAGGAGGAGCACTACCAGGCGATGGTTATGGATCTGCTTGGTCCCTCGCTGGAGAGACTC
TTTCAGTTCTGCGAAAGGGCATTCACCATCAAGACCGTTCTGCTTCTGGCCGAACAGATG
CTTCGCCGGGTGGAGTATGTCCATAACCGGGGATTCCTGCACCGCGACATCAAGCCGGAT
AACTTCCTGATGGGTCTGGGTACCATGTCCAAGCAAGTGTACCTCATCGATTTCGGGCTA
TCCAAGAAGTATCTGGACATAACCACTGGTGTCCATATACCATATCGCGAGGAGCGTTCC
TTGACGGGAACAGCCAGGTACGCCTCCATTGGCGCCCATGCCGGCGTCGAATCCGCCAGA
AGGGATGACATGGTGGCCGTTGGCTATGTCCTTATGTACTTCAATCGGGGATCACTGCCG
TGGCAGGATTTAAAGGCGTCCACCAAGCAGCAGAAATATGAACGCATACATGAGAAAAAG
ATCTCGGTAAGCATTGAGGTACTTTGCGAGGGATTTCCCTGCGAGTTCACAATGTACTTA
AACTACTGCCGCGGCATGGGATTCTACGATAAGCCCAACTACGACTTCATCTGCCGCATG
TTTCGGATGCTGCGGAATGGTCTCAATCTTCGGCCGGGTCTCATCTACGACTGGGACATG
CTGATGATGAAGTTCCACAATACTCAGAAAAATCCTGGCATTGGAATGCGTGTATTTCCA
CCTAAACAGAAGGAAGATGATGGTATCAGCGGTGAGCCGATCATCAAAGATGAGAAGTGC
AACTTCTGGCCGTGA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MRILKESRPEIIVGGKYRVIRKIGSGSFGDIYLGMSIQSGEEVAIKMESAHARHPQLLYEAKLYRILSGGVGFPRIRHHGKEKNFNTLVMDLLGPSLEDL
M..L..S.......G.Y.V.RKIG.GSFGDIYLG..I.SGE.VAIK.ES...RHPQL.YE...YR.L....G.PRIR...KE......VMDLLGPSLE.L
Retrocopy
MERLRSSQNREVRIGNYKVVRKIGCGSFGDIYLGIYIHSGERVAIKVESSKVRHPQLNYERRIYRALRPAHGLPRIRYFHKEEHYQAMVMDLLGPSLERL


Parental protein
FNFCTRHFTIKTVLMLVDQMIGRLEYIHLKCFIHRDIKPDNFLMGIGRHCNKLFLIDFGLAKKFRDPHTRHHIVYREDKNLTGTARYASINAHLGIEQSR
F.FC.R.FTIKTVL.L..QM..R.EY.H...F.HRDIKPDNFLMG.G.......LIDFGL.KK..D..T..HI.YRE...LTGTARYASI.AH.G.E..R
Retrocopy
FQFCERAFTIKTVLLLAEQMLRRVEYVHNRGFLHRDIKPDNFLMGLGTMSKQVYLIDFGLSKKYLDITTGVHIPYREERSLTGTARYASIGAHAGVESAR


Parental protein
RDDMESLGYVMMYFNRGVLPWQGMKANTKQQKYEKISEKKMSTPIEVLCKGSPAEFSMYLNYCRSLRFEEQPDYMYLRQLFRILFRTLNHQYDYIYDWTM
RDDM...GYV.MYFNRG.LPWQ..KA.TKQQKYE.I.EKK.S..IEVLC.G.P.EF.MYLNYCR...F...P.Y......FR.L...LN.....IYDW.M
Retrocopy
RDDMVAVGYVLMYFNRGSLPWQDLKASTKQQKYERIHEKKISVSIEVLCEGFPCEFTMYLNYCRGMGFYDKPNYDFICRMFRMLRNGLNLRPGLIYDWDM


Parental protein
LKQKTHQGQPNPAI---LLEQLDKDKEKQNGKPLIAD
L..K.H..Q.NP.I.........K......G.P.I.D
Retrocopy
LMMKFHNTQKNPGIGMRVFPPKQKEDDGISGEPIIKD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide