RetrogeneDB ID:
retro_dmel_37
Organism:
Drosophila melanogaster ( Drosophila_melanogaster )
Location:
2R:13843048-13843993 (-)
Status:
KNOWN_PROTEIN_CODING
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
62.96 %
Coverage:
90.83 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
Pp1alpha-96A
Parental gene aliases:
No gene alias available
Parental gene description:
Protein phosphatase 1alpha at 96A [Source:FlyBase gene name;Acc:FBgn0003134]

Genomic region (view in browser)





>retro_dmel_37
ATGGCCGTCTTAACTACTCACGAAATAGATTGCATTATAAAGGAGCTCACATCCCTGAAT
GGAAGTGAGTGCACATTAAAGGAGGAACTAATCGAGAGACTCATTCAACAGACTCGTGAA
GTGATCAAATGGCAACCGATGCTGCTCGAACTTCAGGCTCCGGTCAATATATGCGGCGAT
ATTCATGGCCAGTTTACAGATCTCTTGAGGATTTTCAAGGCATGCGGCTTTCCACCCAAA
GCCAACTATTTATTTCTCGGTGACTATGTGGACCGGGGCAAGCAATCGCTGGAAACAATT
TGCCTGCTATTTGCTTACAAAGTTAAATATCCGCTAAATTTCTTTTTGCTTCGCGGCAAT
CACGAGAGCGCCAGTATAAATAAAATTTACGGATTTTATGACGAGATCAAACGTAGACAC
ACTGTTCGTCTGTGGCACAGTTTCACCGATTGCTTCAACTGGCTTCCGGTGGCCGCATTG
GTGGGCGAGCGCATCTTCTGCTGCCACGGAGGACTGAGTCCATCGCTCCGGAATTTGCAA
CAGATCAATCATATTCAGCGACCCACTGATATTCCGGATGAGGGTATCATGTGCGATCTC
CTTTGGGCGGATCTAAATCACACCACCAAAGGCTGGGGTCACAACGATCGCGGTGTGAGC
TTCACCTTCGATAAGGTCATAGTTCGGGATTTTCTTAAAGCCTTCGACTTGCAACTTATG
GTTCGCGCCCATGAGGTTGTGGAGGATGGATACGAGTTCTTTGCCAACCGACAGCTGGTC
ACCGTATTCTCGGCCCCCAACTATTGCGGTATGATGAACAATGCCGGCGGAGTGATGAGT
GTTAGCACAGACTTGATCTGCTCCTTCGTCATTATTCTACCGTGTCACAAATACAAAATG
ATTGCGACTGATGCCAACCAAATGCCGACTAACGAAGAGGAGTGA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
IDSIISRLLEVRGARPGKNVQLSESEIRSLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLL
ID.II..L........G....L.E..I..L....RE....QP.LLEL.AP..ICGDIHGQ..DLLR.F...GFPP..NYLFLGDYVDRGKQSLETICLL.
Retrocopy
IDCIIKELTSLN----GSECTLKEELIERLIQQTREVIKWQPMLLELQAPVNICGDIHGQFTDLLRIFKACGFPPKANYLFLGDYVDRGKQSLETICLLF


Parental protein
AYKIKYAENFFLLRGNHECASINRIYGFYDECKRRYTIKLWKTFTDCFNCLPVAAIVDEKIFCCHGGLSPDLSSMEQIRRIMRPTDVPDQGLLCDLLWSD
AYK.KY..NFFLLRGNHE.ASIN.IYGFYDE.KRR.T..LW..FTDCFN.LPVAA.V.E.IFCCHGGLSP.L....QI..I.RPTD.PD.G..CDLLW.D
Retrocopy
AYKVKYPLNFFLLRGNHESASINKIYGFYDEIKRRHTVRLWHSFTDCFNWLPVAALVGERIFCCHGGLSPSLRNLQQINHIQRPTDIPDEGIMCDLLWAD


Parental protein
PDKDTMGWGENDRGVSFTFGAEVVGKFLQKHEFDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDDTLMCSFQILKPADKRRFV
....T.GWG.NDRGVSFTF....V..FL......L..RAH.VVEDGYEFFA.RQLVT.FSAPNYCG...NAG..MSV...L.CSF.I..P..K....
Retrocopy
LNHTTKGWGHNDRGVSFTFDKVIVRDFLKAFDLQLMVRAHEVVEDGYEFFANRQLVTVFSAPNYCGMMNNAGGVMSVSTDLICSFVIILPCHKYKMI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide