RetrogeneDB ID:
retro_dmel_41
Organism:
Drosophila melanogaster ( Drosophila_melanogaster )
Location:
3L:17542936-17543749 (+)
Status:
KNOWN_PROTEIN_CODING
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
50.21 %
Coverage:
80.34 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
CG10472
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_dmel_41
ATGATGAAACTTTTGGTTTGCGTCCTGCTGGTAGGATCCTGTACGGCTGTTCCCCTCCTT
ACCGATGTGGAACCCTATATTACGAATGGAGAACCGGCGGAGGTGGGTCAGTTTCCCTAC
CAGGCCGGTCTGAACGTCTCCTTCGGGAACTGGAGCACTTGGTGCGGCGGCACCTTGATC
TCACACTACTGGATAATCACAGCAGCACACTGCATGGATGGGGCGGAGTCCGTAACGGTC
TATTTGGGGGCCATAAACATCGGTGATGAGTCCGAGGAGGGTCAAGAAAGGATCATGGTG
GAGAAGTCGGGTATTATAGTGCACTCGAACTATATGGCCAGCACGGTGGTCAACGACATC
TCGCTTATTCGATTGCCCGCCTTTGTGGGTTTCACTGATCGCATCCGGGCCGCCAGTTTG
CCCCGTCGCTTGAATGGCCAGTTTCCCACGTACGAGTCCATCCGGGCCTTCGCCTCCGGC
TGGGGGCGGGAAAGCGATGCCTCCGACTCGGTTTCCCCCGTGCTGAGATACGTGGAGATG
CCCATTATGCCTCACTCCCTGTGCCGGATGTACTGGAGTGGAGCTGTGTCGGAGAAGATG
ATCTGCATGAGCACCACCAGCGGCAAGTCCACCTGCCATGGTGACTCTGGCGGTCCGCTG
GTCTACAAGCAGGGCAACTCCAGCTACCTGATCGGATCCACCTCTTTTGGAACCTCTATG
GGATGTCAAGTGGGATTCCCGGCCGTGTTCACCCGCATCAGCAGCTACTTGGACTGGATC
CTTAACCATATCATCGCCCATAATAAAGAATAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ITGGQIAEPNQFPYQVGLLLYITGGAAWCGGTIISDRWIITAAHCTDSLTTGVDVYLGAHDRTNAKEEGQQIIFVETKNVIVHEDWIAETITNDISLIKL
IT.G..AE..QFPYQ.GL.........WCGGT.IS..WIITAAHC.D.....V.VYLGA.......EEGQ..I.VE....IVH....A.T..NDISLI.L
Retrocopy
ITNGEPAEVGQFPYQAGLNVSFGNWSTWCGGTLISHYWIITAAHCMDG-AESVTVYLGAINIGDESEEGQERIMVEKSGIIVHSNYMASTVVNDISLIRL


Parental protein
PVPIEFNKYIQPAKLPVK-SDSYSTYGGENAIASGWGKISDSATGATDILQYATVPIMNNSGCSPWYFGLVAASNICIKTTGGISTCNGDSGGPLVLDDG
P....F...I..A.LP........TY....A.ASGWG..SD........L.Y...PIM..S.C.....G.V....IC..TT.G.STC.GDSGGPLV...G
Retrocopy
PAFVGFTDRIRAASLPRRLNGQFPTYESIRAFASGWGRESDASDSVSPVLRYVEMPIMPHSLCRMYWSGAVSEKMICMSTTSGKSTCHGDSGGPLVYKQG


Parental protein
-SNTLIGATSFGIALGCEVGWPGVFTRITYYLDWI
.S..LIG.TSFG...GC.VG.P.VFTRI..YLDWI
Retrocopy
NSSYLIGSTSFGTSMGCQVGFPAVFTRISSYLDWI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide