RetrogeneDB ID:
retro_dmel_43
Organism:
Drosophila melanogaster ( Drosophila_melanogaster )
Location:
3R:5946244-5947096 (-)
Status:
KNOWN_PROTEIN_CODING
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
72.83 %
Coverage:
83.77 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
gammaSnap
Parental gene aliases:
No gene alias available
Parental gene description:
gamma-soluble NSF attachment protein [Source:FlyBase gene name;Acc:FBgn0028552]

Genomic region (view in browser)





>retro_dmel_43
ATGAGCACTCTTGATGCCAAAAAGATAGAAGAGGCGGAGGCCTTGATAGGACAGACGGAT
AGTGCCGCGAATGAGTATGCCAAAGCTGGTATGTATTTCAAGGCAGCAACCGCATATCGA
ATTGCCAAAAGTTTCGATAAGCGCAAGGATTGTCTTTTGAAGGCCATCGACTGTTACGAA
AACAACAAGTCATGGTTCCATGCAGCCAAATCCTACGAGCAGATTATCCTGCTTGCCAAA
GAAACGGACAAACTGTCCGAAGTGGAGGACTATGCCAATAGGGCTTGCTGTCTCTACCAG
CAACATGGTTCGCCGGAAGCAGCAGCTGCTGCTCTCGATAAAGCCGCCAAAATGACGGAA
TCCAAGCATCCTGACTTGGCTTTGGGATTTTACAAACGCGCCCTGGCAGTCGTCTTGATT
GGGGACTCCACTCATCAGGCATCGGAATTTGCATCGAAGGTTTCCCGGATATTGGTCAGA
CTCAAAAAATATGAAGAAGCCACGAAAGCCCTCAAAAAGGAAATAAGCCTAAATCTGCAG
ACAAAGTCTTACGGACAAGTTGGCCGTTTAGTAGTTGCTTTAATACTGGTACAATTAACA
CTAGAGGATTACGTGGATGCCAAGAAGACCTTCAAGAAATGGGGAAACCGTTGTGATCCC
CAGGAGGTGAACACATTACAAAACCTACTCAAAGCTTTTGACGACGAGGATCCTGAGCTG
GCCACCAAGATGCTGGCATCTCCATTCATAAGACACATGGACGTGGAGTACGCACTTTTA
TCTAAAGATGTGCCATTACCAAAAGGAAATCGTCAAATGACCAAAAATGCAGTCGACAAT
GCCGCAAACTAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ADEYSKAATAYRIAKSYDKSKECFLKAIDAYKNNKSWFHAAKAYEQIILLSKDADKLHEVEEYANKSASLYQQHGSPEAAASALDKAAKLTESKHPDMAL
A..Y.KAATAYRIAKS.DK.K.C.LKAID.Y.NNKSWFHAAK.YEQIILL.K..DKL.EVE.YAN....LYQQHGSPEAAA.ALDKAAK.TESKHPD.AL
Retrocopy
AGMYFKAATAYRIAKSFDKRKDCLLKAIDCYENNKSWFHAAKSYEQIILLAKETDKLSEVEDYANRACCLYQQHGSPEAAAAALDKAAKMTESKHPDLAL


Parental protein
RFYQHALEVIMIEDSVRQAAEYASKVSRILVKLRRYDEATNALKKEISLNQQTESYGQIGRLVVALVMVQLARGDSVEAEKTFREWGNCCEPEEVSTLQT
.FY..AL.V..I.DS..QA.E.ASKVSRILV.L..Y.EAT.ALKKEISLN.QT.SYGQ.GRLVVAL..VQL...D.V.A.KTF..WGN.C.P.EV.TLQ.
Retrocopy
GFYKRALAVVLIGDSTHQASEFASKVSRILVRLKKYEEATKALKKEISLNLQTKSYGQVGRLVVALILVQLTLEDYVDAKKTFKKWGNRCDPQEVNTLQN


Parental protein
LLQAFDDEDPELAARMLASPFIRHMDVEYAILSKNIPLPQG-IQMEKKAGDTAA
LL.AFDDEDPELA..MLASPFIRHMDVEYA.LSK..PLP.G..QM.K.A.D.AA
Retrocopy
LLKAFDDEDPELATKMLASPFIRHMDVEYALLSKDVPLPKGNRQMTKNAVDNAA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide