RetrogeneDB ID:
retro_dmel_44
Organism:
Drosophila melanogaster ( Drosophila_melanogaster )
Location:
2L:132482-133682 (+)
Status:
KNOWN_PROTEIN_CODING
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
64.95 %
Coverage:
99.46 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
Gs2
Parental gene aliases:
No gene alias available
Parental gene description:
Glutamine synthetase 2 [Source:FlyBase gene name;Acc:FBgn0001145]

Genomic region (view in browser)





>retro_dmel_44
ATGGCACTACGCGTGGCAGGACTCTTCCTGAAGAAGGAGCTGGTGGCTCCCGCAACACAG
CAGCTGCGTCTGCTGCGTACTGGCAATACCACCCGCTCCCAGTTCTTGGCCAACTCCCCC
AACACGGCTCTAGACAAGAGCATTCTGCAGAGGTACCGCAACCTGGAAACGCCGGCCAAT
CGAGTGCAGGCTACTTACTTATGGATCGACGGTACCGGCGAGAACATTCGCCTCAAGGAT
CGCGTTTTGGACAAAGTACCCAGCTCCGTGGAGGACTTGCCGGATTGGCAGTACGACGGC
AGTTCCACCTACCAGGCCCATGGCGAGAACTCGGACACCACGCTCAAGCCACGCGCCATA
TATCGCGATCCCTTTAAGCCGGGAAAGAACGACGTAATTGTCCTGTGCGACACCTACAGC
GCCGACGGCAAGCCGACGGCGTCCAACAAGCGTGCCGCGTTCCAGGCAGCCATTGACCTA
ATTAGCGATCAGGAGCCCTGGTTCGGCATTGAGCAAGAATACACTTTATTAGACGTGGAC
GGACGTCCCTTCGGCTGGCCGGAGAACGGTTTCCCAGCCCCACAAGGTCCTTACTACTGC
GGCGTGGGAGCTGACCGTGTGTACGCTCGCGATCTTGTGGAGGCCCACGTCGTGGCCTGC
CTGTATGCTGGGATCGACTTCGCCGGCACCAATGCCGAGGTAATGCCCGCGCAGTGGGAG
TTCCAAATTGGTCCAGCCGGGATTAAGGCATGTGACGATTTATGGGTGTCGCGATATATT
TTGCAGCGCATAGCTGAGGAGTATGGCGTAGTGGTCACCTTTGACCCCAAACCGATGGAG
GGTCAGTGGAACGGAGCCGGCGCGCATACCAACTTTTCCACAAAGGAGATGCGTGCTGAT
GGCGGAATCAAGGCCATCGAGGAAGCTATCGAGAAGCTGAGCAAGCGCCACGAGCGGCAC
ATCAAGGCATACGACCCCAAGGAAGGCAAAGACAATGAACGGCGCCTCGTGGGACGTCTT
GAGACTTCTAGCATCGATAAGTTTTCTTGGGGCGTGGCCAACCGGGCCGTAAGTGTGCGA
GTGCCGCGTGGCGTTGCGACGGCCGGCAAAGGATACCTCGAAGACCGGCGGCCAAGCTCC
AACTGTGATCCCTACGCCGTGTGCAACGCCATTGTTCGCACCTGCCTGCTCAACGAGTAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SAILEDSPNARINKTILDRYLSLPLQENIVQATYVWIDGTGEDLRCKDRTLDFIPQSPKELPVWNYDGSSCYQAEGSNSDTYLYPVAIYKDPFRRG-NNI
S..L..SPN....K.IL.RY..L....N.VQATY.WIDGTGE..R.KDR.LD..P.S...LP.W.YDGSS.YQA.G.NSDT.L.P.AIY.DPF..G.N..
Retrocopy
SQFLANSPNTALDKSILQRYRNLETPANRVQATYLWIDGTGENIRLKDRVLDKVPSSVEDLPDWQYDGSSTYQAHGENSDTTLKPRAIYRDPFKPGKNDV


Parental protein
LVMCDTYKFDGTPTDTNKRKTCLEVANKCAAEEPWFGIEQEYTFLDFDGHPLGWPKNGFPGPQGPYYCGVGANKVYARDIVDAHYRACLYAGIKVSGTNA
.V.CDTY..DG.PT..NKR.............EPWFGIEQEYT.LD.DG.P.GWP.NGFP.PQGPYYCGVGA..VYARD.V.AH..ACLYAGI...GTNA
Retrocopy
IVLCDTYSADGKPTASNKRAAFQAAIDLISDQEPWFGIEQEYTLLDVDGRPFGWPENGFPAPQGPYYCGVGADRVYARDLVEAHVVACLYAGIDFAGTNA


Parental protein
EVMPAQWEFQVGPCEGISIGDDLWMARFLLHRISEEFGIVSTLDPKPMPGDWNGAGAHTNVSTKAMREDGGIRDIEKAVAKLSKCHERHIRAYDPKQGQD
EVMPAQWEFQ.GP..GI...DDLW..R..L.RI.EE.G.V.T.DPKPM.G.WNGAGAHTN.STK.MR.DGGI..IE.A..KLSK.HERHI.AYDPK.G.D
Retrocopy
EVMPAQWEFQIGPA-GIKACDDLWVSRYILQRIAEEYGVVVTFDPKPMEGQWNGAGAHTNFSTKEMRADGGIKAIEEAIEKLSKRHERHIKAYDPKEGKD


Parental protein
NARRLTGKHETSSINDFSAGVANRGCSIRIPRGVNDDGKGYFEDRRPSSNCDPYSVVEAILRTICLDE
N.RRL.G..ETSSI..FS.GVANR..S.R.PRGV...GKGY.EDRRPSSNCDPY.V..AI.RT..L.E
Retrocopy
NERRLVGRLETSSIDKFSWGVANRAVSVRVPRGVATAGKGYLEDRRPSSNCDPYAVCNAIVRTCLLNE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide