RetrogeneDB ID:
retro_dmel_46
Organism:
Drosophila melanogaster ( Drosophila_melanogaster )
Location:
2L:13595551-13596997 (-)
Status:
KNOWN_PROTEIN_CODING
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
71.31 %
Coverage:
93.75 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
dmGlut
Parental gene aliases:
No gene alias available
Parental gene description:
Dietary and metabolic glutamate transporter [Source:FlyBase gene name;Acc:FBgn0010497]

Genomic region (view in browser)





>retro_dmel_46
ATGGCGGATGCAAAAGAGCAACCAGAATGGGGCATAAAGCTCTCAAAATTCTTTGTATTA
CCCCAACGCTGGATTCTGGCCATCATGGGATTCTTTGCCATCTTTAATGCATACACCATG
CGGATATGTCTATCCCAGGCCATCACAGTGCTGGTGGTGAAGAGGAATTATACTATTTTC
CACACCGAAGCGATATGTGAACCGGATGACCAGTCTGATCCCTCGAGCACTTTCGAGGGA
GGCGACTATGATTGGTCGCAGGAGAAACAGGGTCTAATCCTGGCCTCTTTCTACATTGGC
TATATTGTAACTCATTTGCCTGGTGGAATTCTGGCTGACAAATTTGGCGGAAAGTGGACA
CTGAGTCTTGGAATCTTTTTTACGGCTATTTTTACATTGCTGACACCCGTCTGCATTGTT
TATGGCGGTGCCGATGCATTAATTGTCCTCCGCGTACTTATGGGACTCGGTGAAGGAACC
ACTTTCCCCGCACTCAGCGTTTTGCTAGCCAGCTGGGTACCGGCAAACGAGCGAGGAATG
CTGGGAGCCCTTGTACTCGGCGGTGGTCAGATGGGTAGTATTGCTGGTAACATTATTTCT
GGCTATGTACTCAGCTCCATGGACTGGCCATGGGTATTCTATGTTTTTGCGATCATCGCC
CTTGTCTGGTTTGTCGTTTTCACGCTAGTGTGCTTTAGCAGTCCATTCACTCATCCATAT
ATCAAGCCAGAGGAACGTGCGTTCTTGGCACAGGAGGTACCGCCGCCGGATAAGAACAAG
CCGAAGACACCATTTTTTGCCATATTAACAAGCATACCCATGTGGGCATTGATCAGTGCT
CAAATCGGACACGATTGGGGTTTCTATATTATGGTCTCCTACCTGCCAAAGTATATGTCG
GATGTGCTGCGGTTTTCGATTAAGTCGAATGGTCTCTACTCCTCACTGCCCTACGTTACC
ATGTGGATCATGTCGCTGCTCAGCGGCTGTGTGGCCGATCAAATGATCAAACGCAACTGC
ATGAGCACCACAAACACGCGCAAAATAATGACAGGAGTGGCCGCCTTTGGACCGGCTGTC
TTCATGGTAGCTGCATCCTATGCTGGATGCAATCGAGGCATGGTCGTTGCTCTATTCACA
ATTACCATGGGTCTGATGGGCACCTACTATGCTGGCATGAAGCTCACGCCATTGGACATG
AGTCCGAATTATGCTGGAACTCTGATGGCCATTACCAATGGCATTGGTGCGATTACGGGC
GTGGTATCACCATACTTAGTTGGTGTAATGACACCGAATGCCACCCTCTTGGAGTGGAGA
TTAGTCTTCTGGGTCGCATTTGGCGTTCTTGTCGTCACGGCGATTGTGTATTGTATTTGG
GCGTCCGGCGATGTGCAACCCTTCAATGATGGCACCAATTCAAACAAGAAGAAGGATGCC
GCCTGA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QQPQWGISLSRYFVIPQRVILAIMGFLAILNAYTMRVCLSQAITVLVVKKNSTDDDSEAICEPDDIDEGTSV--GGDFEWSEELQGLILSSFYIGYIVTH
.QP.WGI.LS..FV.PQR.ILAIMGF.AI.NAYTMR.CLSQAITVLVVK.N.T....EAICEPDD.....S...GGD..WS.E.QGLIL.SFYIGYIVTH
Retrocopy
EQPEWGIKLSKFFVLPQRWILAIMGFFAIFNAYTMRICLSQAITVLVVKRNYTIFHTEAICEPDDQSDPSSTFEGGDYDWSQEKQGLILASFYIGYIVTH


Parental protein
IPGGLLAEKFGGKWTLGLGILSTAVFTMLTPLAINKGDSDWLIVTRVLMGLGEGTTFPALSVLLAAWVPANERGKLGALVLGGGQVGTIMGNLLSGVFID
.PGG.LA.KFGGKWTL.LGI..TA.FT.LTP..I..G..D.LIV.RVLMGLGEGTTFPALSVLLA.WVPANERG.LGALVLGGGQ.G.I.GN..SG....
Retrocopy
LPGGILADKFGGKWTLSLGIFFTAIFTLLTPVCIVYGGADALIVLRVLMGLGEGTTFPALSVLLASWVPANERGMLGALVLGGGQMGSIAGNIISGYVLS


Parental protein
AYGWEFVFYFFGGLGVVWFAIFMFLCYSDPTSHPFIKPSEREYLVKEIGTISRNEDLPPTPWKAILTNLPMFALVAAQIGHDWGFYIMVTDLPKYMADVL
...W..VFY.F.....VWF..F...C.S.P..HP.IKP.ER..L..E......N...P.TP..AILT..PM.AL..AQIGHDWGFYIMV..LPKYM.DVL
Retrocopy
SMDWPWVFYVFAIIALVWFVVFTLVCFSSPFTHPYIKPEERAFLAQEVPPPDKNK--PKTPFFAILTSIPMWALISAQIGHDWGFYIMVSYLPKYMSDVL


Parental protein
QFSIKANGLYSSLPYVMMWIVSVGSGFVADWMIRRGVLSTTNTRKVMTGLAAFGPAIFMVGASYAGCDRVLVVVLFTICMGLMGAYYAGMKLSPLDMSPN
.FSIK.NGLYSSLPYV.MWI.S..SG.VAD.MI.R...STTNTRK.MTG.AAFGPA.FMV.ASYAGC.R..VV.LFTI.MGLMG.YYAGMKL.PLDMSPN
Retrocopy
RFSIKSNGLYSSLPYVTMWIMSLLSGCVADQMIKRNCMSTTNTRKIMTGVAAFGPAVFMVAASYAGCNRGMVVALFTITMGLMGTYYAGMKLTPLDMSPN


Parental protein
YAGTLMAITNGIGAITGVITPYLVGVMTPNASLLEWRLVFWVAFGVLCFTAVIYCIWASGEVQPFNN
YAGTLMAITNGIGAITGV..PYLVGVMTPNA.LLEWRLVFWVAFGVL..TA..YCIWASG.VQPFN.
Retrocopy
YAGTLMAITNGIGAITGVVSPYLVGVMTPNATLLEWRLVFWVAFGVLVVTAIVYCIWASGDVQPFND


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide