RetrogeneDB ID:
retro_dmel_49
Organism:
Drosophila melanogaster ( Drosophila_melanogaster )
Location:
3L:11725323-11726547 (+)
Status:
KNOWN_PROTEIN_CODING
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
57.55 %
Coverage:
64.95 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
Tango5
Parental gene aliases:
No gene alias available
Parental gene description:
Transport and Golgi organization 5 [Source:FlyBase gene name;Acc:FBgn0052675]

Genomic region (view in browser)





>retro_dmel_49
ATGGCTGCTAGCAATGACACTGAAGCAGGACACTCTTCATTGCCCAGTGAAATAGATCGC
TTGGCTGAACTGGTACAGGAGCGGCTGGAATGGAAGTCTCTGGTTCTTTGGCGTCGTCCT
GTGCAGACTTTGAAGTATGGTGGCCTGGAGGCCGGGCATTTGTTGCTATCCTTCATCGAA
AAGCTGTTGAATCTGTGGCTAGTGGGCGGTCTGCTGCTGTTGGGCATGTTTTGTTTACTG
CCAGGACCTCATGCGGATTTCGTGATTTTCTGCAAGCATAGGTTTGGATTTGCGGTCTAC
TGGCTGGGCCTGGGCGTGCTCTCATCTGTGGGCTTTGGCACTGGGTTGCACACCTTTCTG
CTCTACCTGGGCCCTCACCTAGCAGCAGTCACTCTGGCCGCCTACGAGTGTCAAACGCTG
GACTTTCCCACTCCTCCGTATCCGGACATAAAAGTCTGCCCACAGGAGCCGTACAAGCGC
AATTACCCAGATGTATGGCAAATTTTGGCAAAGGTGCGTCCGGAGGCGCTACTCTGGGGC
ATTGGCACTGCTCTTGGTGAGCTGCCGCCATACTTTATGACACGTAGAGCACGGCTCTCT
GGCAAGGAGTTGGATGGAGCGGAGGAGGAAAAGTTATTGGATGAAAGGCGAAGGTGCGGA
AAGCTAGGCATGCTCGACCATGCCAAGCTGTTCATGGAACGGGTGATGCGAAGAGTGGGC
TTCATGGGAATACTATTCTGCGCCAGCGTACCCAATCCTCTGTTCGACCTGGCCGGCATA
ACGTGCGGACATTTTCTGGTGCCCTTTTGGAAGTTCTTTGTGGCCACCCTGATCGGCAAG
GCGTTAATCAAGGCCACCATACAGCAGTTGTTTGTTATTGCGTCCCTAACCGAGAGTCTA
GTCGATAGGTTTGTGGTCGGTCTGGGGAAGCTACCCTATTTGGGACCTCCAATGCAGCGC
ATGATCAGGGAACTGCTGCAGTCGACGAAGCAGCAGATGCATGGAACAGTAAATTCCAAT
TCCCTGGCCTATCTAAGCCATCTGGTTCGTGCTTTCGAGCTGTGTGCCTTCATCATGGTC
ACCTGTTTCGTAGTATCTTCGCTGAACTGCCTCGCGCAAATCCATTGCAAGCGCCAGCAG
GAGAAGAAGCGTAAGATGCGAAACCTGGAGATGATACTGTATGCCGATACGGAGACATCC
TCGTCGGAGGAGTTCAGCGTCTAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QRLLLATLIVLSIVFSVIYKIDGPHQLAIEFVRRNTWFFVYWLGLGVLSSVGLGTGLHTFLLYLGPHIASVTLAAYECNSLRFPQPPYPDDIICPEEPYD
..LL...L..............GPH.....F......F.VYWLGLGVLSSVG.GTGLHTFLLYLGPH.A.VTLAAYEC..L.FP.PPYPD...CP.EPY.
Retrocopy
EKLLNLWLVGGLLLLGMFCLLPGPHADFVIFCKHRFGFAVYWLGLGVLSSVGFGTGLHTFLLYLGPHLAAVTLAAYECQTLDFPTPPYPDIKVCPQEPYK


Parental protein
KHVPNIWSIMSKVRLEAFLWGAGTALGELPPYFMAKAARLSGYDPEDAEELAEFEALNAKRHQKNLSMMDRGKLFMERVVERVGFFGILACASIPNPLFD
...P..W.I..KVR.EA.LWG.GTALGELPPYFM...ARLSG.....AEE......L...R....L.M.D..KLFMERV..RVGF.GIL.CAS.PNPLFD
Retrocopy
RNYPDVWQILAKVRPEALLWGIGTALGELPPYFMTRRARLSGKELDGAEE---EKLLDERRRCGKLGMLDHAKLFMERVMRRVGFMGILFCASVPNPLFD


Parental protein
LAGITCGHFLVPFWTFFGATLIGKAVIKMHIQKIFVIIAFNETLIERAVDLLATLPVLGHKLQEPFKSFLKNQKQRLH
LAGITCGHFLVPFW.FF.ATLIGKA.IK..IQ..FVI....E.L..R.V..L..LP.LG...Q......L...KQ..H
Retrocopy
LAGITCGHFLVPFWKFFVATLIGKALIKATIQQLFVIASLTESLVDRFVVGLGKLPYLGPPMQRMIRELLQSTKQQMH


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide