RetrogeneDB ID:
retro_dmel_54
Organism:
Drosophila melanogaster ( Drosophila_melanogaster )
Location:
3L:12964381-12965431 (-)
Status:
KNOWN_PROTEIN_CODING
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
52.43 %
Coverage:
91.96 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
Mdh2
Parental gene aliases:
No gene alias available
Parental gene description:
Malate dehydrogenase 2 [Source:FlyBase gene name;Acc:FBgn0262559]

Genomic region (view in browser)





>retro_dmel_54
ATGTTGTTACTGACAAGTCTTAAAAGCCTGGCAAAACCAGCTACATGGGGAGTTGTGGTC
CGCACTTTAAAGGTCGCCGTTGTCGGTGCCGGAGGAGGAATTGGACAACCGCTATCGCTT
CTGCTCCGTCGCTGTCCTGGAATCGATGAGCTGGCTCTACATGATCTCAGCGAAATGAAG
GGAATTGCTACGGATCTATCCCATATAAGCCAAACGGGAAAGGTGATAGGTTTTACCGGT
GAAAAGGAACTGGAGTCGGCGGTGAGTGGAGCTGATGTGGTGGTTGTGGCGGCAGGGATG
CCACGTCTGCCAGGAATGCAAAGGGATCACCTGATGGCCGCCAATGGAAATGTTGCAGTG
AAAGTTGCCACTGCCATTAGCAATGCCTCTCCACGAGCTCATCTTGCCTTTATTACCAAT
CCGGTCAATATGATTGTGCCCGCCGCAGCTGAGGTTCTTATGGCCCATGGAACTTTTGAT
TCTCGTCGGCTCTTCGGTATTACGACTTTGGATGTGGTGCGATCGAAAAAGTTCATTGGT
GATTCTATGAACATATCACCGGATGACGTAAACATTCCAGTTATTGGTGGCCATGCGGGG
ATTACAATTCTACCGCTCATTTCGCAGTGTCAGCCGATATATAGATGTGATCTCCAGGAG
ATCCAGAATCTAACTCATCGCATTCAGGAGGCGGGCACAGAGGTGGTGAATGCCAAAGCT
GGAAAAGGATCTGCCACCCTATCGATGGCTTATGCTGGCGCAACTTTCGTGAACTCCCTG
CTGCGTGGAATTGCTGGACAGGATGGTCTAATCGAGTGCGCTTTTGTCGCCTCCAAACTA
ACCGACGCCCCATTCTTTGCTAGTCCATTGGAATTGGGAAAGGATGGTATCAAGCGCTAT
ATACCACTTCCCCAGATGAGTGACTACGAAAAGGAGGCTTTGGAAAAGCTACTACCTATT
CTACGACAGAATGCTGATGAGGGTGTCAATTTTGCAAAAATGATTTTGAGTGGACAATCA
CATTCTCCCATTCCAGCGGCCTTGCCGTAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KVTVCGAAGGIGQPLSLLLKQNPLVTDLALYDIVHTPGVAADLSHIDTKSKTAGFIGADQLGDSLKGSDVVVIPAGVPRKPGMTRDDLFNVNAGIIKDIS
KV.V.GA.GGIGQPLSLLL...P....LAL.D.....G.A.DLSHI....K..GF.G...L.....G.DVVV..AG.PR.PGM.RD.L...N........
Retrocopy
KVAVVGAGGGIGQPLSLLLRRCPGIDELALHDLSEMKGIATDLSHISQTGKVIGFTGEKELESAVSGADVVVVAAGMPRLPGMQRDHLMAANGNVAVKVA


Parental protein
NSIAKNCPKALVAIITNPVNTCVPIAAEILKKAGVYDPKRLFGVSTLDVVRARAFIGHALGVDPQTVQIPVIGGHSGVTILPVLSQSQPLFKGNQDTIEK
..I....P.A..A.ITNPVN..VP.AAE.L...G..D..RLFG..TLDVVR...FIG......P..V.IPVIGGH.G.TILP..SQ.QP........I..
Retrocopy
TAISNASPRAHLAFITNPVNMIVPAAAEVLMAHGTFDSRRLFGITTLDVVRSKKFIGDSMNISPDDVNIPVIGGHAGITILPLISQCQPIYRCDLQEIQN


Parental protein
LTVRIQEAGTEVVKAKAGAGSATLSMAYAGARFAGSLLKGLNGEKNVIECSYVQSTVTEATFFSTPLVLGKNGVQENLGLPKLNDYEKKLLEAAIPELKK
LT.RIQEAGTEVV.AKAG.GSATLSMAYAGA.F..SLL.G..G....IEC..V.S..T.A.FF..PL.LGK.G......LP...DYEK..LE...P.L..
Retrocopy
LTHRIQEAGTEVVNAKAGKGSATLSMAYAGATFVNSLLRGIAGQDGLIECAFVASKLTDAPFFASPLELGKDGIKRYIPLPQMSDYEKEALEKLLPILRQ


Parental protein
NIQKGIDFA
N...G..FA
Retrocopy
NADEGVNFA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide