RetrogeneDB ID:
retro_dmel_57
Organism:
Drosophila melanogaster ( Drosophila_melanogaster )
Location:
3R:8057520-8058399 (-)
Status:
KNOWN_PROTEIN_CODING
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
75.89 %
Coverage:
99.22 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
Pglym78
Parental gene aliases:
No gene alias available
Parental gene description:
Phosphoglyceromutase [Source:FlyBase gene name;Acc:FBgn0014869]

Genomic region (view in browser)





>retro_dmel_57
ATGTTGGCTCTGGCCAGGAATTCGTGGTGTGGCCAATTGCTGTGTCGCGTGGCGAACATC
GAAGCCCGCTGCCCGTTCTCGAAGTCATCATCCGGCGGAAAGCAGGCCGAGAAGAAGGGC
AAGTACAGGATTGTGATGGTTCGTCATGGAGAGTCCGAATGGAATCAGAAGAACCTATTC
TGCGGATGGTTCGATGCCAAGCTATCGGAGAAGGGGCAGCAGGAGGCCTGTGCCGCTGGC
AAAGCGCTCAAAGATGCCAAAATTGAGTTCGATGTGGCCCACACCTCGGTGCTGACCAGA
GCCCAGGAGACACTCAGGGCCGCCCTAAAGTCCAGCGAGCACAAGAAGATTCCGGTGTGC
ACCACGTGGCGCCTCAACGAGCGCCACTACGGCGGACTGACGGGACTGAATAAGGCCGAG
ACCGCCAAGAAGTTCGGCGAGGAGAAGGTTAAGATCTGGCGCCGCAGCTTTGACACCCCA
CCGCCGCCAATGGAGAAGGATCACGAGTACTACGCCTGCATTGTTGAGGATCCGCGCTAC
AAGGACCAACTGAAGCCGGAGGAGTTCCCCAAATCCGAGTCCCTCAAGCTCACCATCGAG
CGCACCTTGCCCTACTGGAACGAGGTCATAGTGCCCCAGATCAAGGATGGAATGCGTGTC
CTGATCGCCGCCCACGGCAACAGCCTGCGGGGCGTGGTCAAGCACTTGGAATGCATCTCT
GACAAGGACATTATGAGCCTCAACCTGCCCACTGGCATTCCTTTCGTCTACGAACTAGAC
GAGAGCCTCAAGCCTTTGGCCACGTTGAAGTTCCTCGGCGATCCGGAGACGGTGAAGAAG
GCAATGGAGTCGGTGGCCAACCAGGGCAAAGCCAAGTGA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GKYKIVMVRHGESEWNQKNQFCGWYDANLSEKGQEEALAAGKAVKDAGLEFDVAHTSVLTRAQVTLASILKASGHKEIPIQKTWRLNERHYGGLTGLNKA
GKY.IVMVRHGESEWNQKN.FCGW.DA.LSEKGQ.EA.AAGKA.KDA..EFDVAHTSVLTRAQ.TL...LK.S.HK.IP...TWRLNERHYGGLTGLNKA
Retrocopy
GKYRIVMVRHGESEWNQKNLFCGWFDAKLSEKGQQEACAAGKALKDAKIEFDVAHTSVLTRAQETLRAALKSSEHKKIPVCTTWRLNERHYGGLTGLNKA


Parental protein
ETAAKYGEAQVQIWRRSFDTPPPPMEPGHPYYENIVKDPRYAEGPKPEEFPQFESLKLTIERTLPYWNDVIIPQMKEGKRILIAAHGNSLRGIVKHLDNL
ETA.K.GE..V.IWRRSFDTPPPPME..H.YY..IV.DPRY....KPEEFP..ESLKLTIERTLPYWN.VI.PQ.K.G.R.LIAAHGNSLRG.VKHL...
Retrocopy
ETAKKFGEEKVKIWRRSFDTPPPPMEKDHEYYACIVEDPRYKDQLKPEEFPKSESLKLTIERTLPYWNEVIVPQIKDGMRVLIAAHGNSLRGVVKHLECI


Parental protein
SEDAIMALNLPTGIPFVYELDENFKPVVSMQFLGDEETVKKAIEAVAAQGKAK
S...IM.LNLPTGIPFVYELDE..KP.....FLGD.ETVKKA.E.VA.QGKAK
Retrocopy
SDKDIMSLNLPTGIPFVYELDESLKPLATLKFLGDPETVKKAMESVANQGKAK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide