RetrogeneDB ID:
retro_dmel_58
Organism:
Drosophila melanogaster ( Drosophila_melanogaster )
Location:
3L:22543420-22544971 (+)
Status:
KNOWN_PROTEIN_CODING
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
75.91 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
Trxr-1
Parental gene aliases:
No gene alias available
Parental gene description:
Thioredoxin reductase-1 [Source:FlyBase gene name;Acc:FBgn0020653]

Genomic region (view in browser)





>retro_dmel_58
ATGTCGACGATAAAGTTTCTGCGATCCTCCACACACAACGCACTTCGGTCCAGCCTCGGA
TGGTGCCGCCTTGCTGCCTCAAGACCACGCTATGATTACGACCTTGTGGTGCTCGGCGGG
GGCTCGGCGGGATTGGCGTGTGCCAAGGAGGCTGCTGGCTGTGGAGCCCGCGTGCTCTGC
TTCGACTACGTCAAGCCCACTCCAGTGGGCACCAAGTGGGGCATCGGCGGCACCTGCGTG
AATGTGGGCTGCATCCCCAAGAAGCTAATGCACCAGGCCTCGCTGCTGGGCGAGGCTGTT
CACGAGGCGGTGGCCTACGGCTGGAATGTAGACGACACGAACATACGGCCCGATTGGCGC
AAGTTGGTGCGCTCCGTCCAGAACCACATCAAGTCCGTCAACTGGGTGACCCGCGTGGAC
CTGCGCGACAAAAAGGTGGAGTACGTAAATTCGATGGCCACCTTTCGCGACAGCCACACC
ATCGAGTATGTGGCGATGCCAGGTGCCGAGCACCGTCAAGTGACCTCAGAGTACGTGGTG
GTAGCCGTCGGCGGGAGGCCACGCTACCCGGACATTCCCGGAGCCGTTGAACTGGGCATC
ACCAGCGACGATATATTCAGCTACGAGCGAGAGCCGGGTCGTACCCTTGTGGTGGGCGCC
GGATACGTGGGTCTCGAGTGCGCCTGTTTCCTTAAGGGTCTCGGCTACGAGCCCACTGTC
ATGGTGCGCTCCATTGTGCTGCGCGGCTTCGATCGCCAGATGTCCGAGCTGCTGGCCGCC
ATGATGACTGAGCGCGGCATTCCCTTCCTGGGCACCACAATCCCCAAGGCCGTGGAGAGG
CAGGCGGACGGACGGCTGCTAGTTCGGTACCGCAACACAACCACCCAAATGGACGGCAGC
GACGTTTTCGACACCGTGCTGTGGGCCATTGGGCGCAAAGGTCTCATCGAGGACCTCAAC
CTGGACGCCGCCGGAGTGAAGACTCATGACGACAAGATTGTGGTAGACGCCGCGGAGGCC
ACCAGCGTGCCTCATATATTTGCAGTTGGGGACATCATATATGGTCGACCAGAGCTAACG
CCGGTGGCCATCCTGTCGGGCCGCCTGCTTGCCAGGCGTCTGTTCGCCGGCTCCACGCAG
CTGATGGACTATGCCGACGTGGCAACCACAGTTTTTACTCCGCTAGAATACAGTTGCGTC
GGCATGTCGGAGGAAACGGCCATCGAACTGCGTGGTGCTGACAACATCGAGGTCTTCCAC
GGCTACTACAAGCCCACAGAGTTCTTTATTCCCCAGAAGAGCGTGCGTCACTGCTACCTC
AAGGCCGTAGCCGAAGTGTCCGGGGACCAGAAGATCCTTGGCCTGCACTACATCGGCCCA
GTCGCCGGCGAGGTCATCCAGGGCTTCGCCGCAGCCCTCAAGACCGGCTTGACCGTAAAG
ACGCTTCTGAACACGGTGGGAATCCACCCCACCACCGCCGAAGAGTTCACCCGGCTGTCA
ATCACCAAGCGATCTGGTCGGGATCCTACACCAGCCTCCTGTTGCAGTTAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAPVQGSYDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAAYGWNVDE-KIKPDWHKL
.A.....YDYDL.V.GGGSAGLACAKEA...GARV.C.D.VKPTP..GTKWG.GGTCVNVGCIPKKLMHQASLLGEAVHEA.AYGWNVD...I.PDW.KL
Retrocopy
LAASRPRYDYDLVVLGGGSAGLACAKEAAGCGARVLCFDYVKPTP-VGTKWGIGGTCVNVGCIPKKLMHQASLLGEAVHEAVAYGWNVDDTNIRPDWRKL


Parental protein
VQSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFVDSHTL--LAKLKSGERTITAQTFVIAVGGRPRYPDIPGAVEYGITSDDLFSLDREPGKTLVVGAGY
V.SVQNHIKSVNWVTRVDLRDKKVEY.N....F.DSHT....A......R..T....V.AVGGRPRYPDIPGAVE.GITSDD.FS..REPG.TLVVGAGY
Retrocopy
VRSVQNHIKSVNWVTRVDLRDKKVEYVNSMATFRDSHTIEYVAMPGAEHRQVTSEYVVVAVGGRPRYPDIPGAVELGITSDDIFSYEREPGRTLVVGAGY


Parental protein
IGLECAGFLKGLGYEPTVMVRSIVLRGFDQQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEEAEDVYDTVLWAIGRKGLVDDLNLP
.GLECA.FLKGLGYEPTVMVRSIVLRGFD.QM.EL.AA.M.ERGIPFL..T.P..VE.Q.DG.LLV.Y.N..T.....DV.DTVLWAIGRKGL..DLNL.
Retrocopy
VGLECACFLKGLGYEPTVMVRSIVLRGFDRQMSELLAAMMTERGIPFLGTTIPKAVERQADGRLLVRYRNTTTQMDGSDVFDTVLWAIGRKGLIEDLNLD


Parental protein
NAGVTVQKDKIPVDSQEATNVANIYAVGDIIYGKPELTPVAVLAGRLLARRLYGGSTQRMDYKDVATTVFTPLEYACVGLSEEDAVKQFGADEIEVFHGY
.AGV....DKI.VD..EAT.V..I.AVGDIIYG.PELTPVA.L.GRLLARRL..GSTQ.MDY.DVATTVFTPLEY.CVG.SEE.A....GAD.IEVFHGY
Retrocopy
AAGVKTHDDKIVVDAAEATSVPHIFAVGDIIYGRPELTPVAILSGRLLARRLFAGSTQLMDYADVATTVFTPLEYSCVGMSEETAIELRGADNIEVFHGY


Parental protein
YKPTEFFIPQKSVRYCYLKAVAERHGDQRVYGLHYIGPVAGEVIQGFAAALKSGLTINTLINTVGIHPTTAEEFTRLAITKRSGLDPTPASCCS
YKPTEFFIPQKSVR.CYLKAVAE..GDQ...GLHYIGPVAGEVIQGFAAALK.GLT..TL.NTVGIHPTTAEEFTRL.ITKRSG.DPTPASCCS
Retrocopy
YKPTEFFIPQKSVRHCYLKAVAEVSGDQKILGLHYIGPVAGEVIQGFAAALKTGLTVKTLLNTVGIHPTTAEEFTRLSITKRSGRDPTPASCCS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide