RetrogeneDB ID:
retro_dmel_59
Organism:
Drosophila melanogaster ( Drosophila_melanogaster )
Location:
2R:13482788-13484897 (+)
Status:
KNOWN_PROTEIN_CODING
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
79.68 %
Coverage:
92.41 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
CG9140
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_dmel_59
ATGATATCGTTTCTGTTAAAACGCCGAGCTTGTGATGCTTACAAGATTTCATTAGGACTA
ACTCGTGCATATAGAGCCTTAACAGAAGTAAAAAGCCTTCAAAATGCCTTACGACCTGGT
AATAAAACTGGAAATATCAAGCTGGTAAACATATACCGAACTTCTAGCATACAAAATGTG
AAGAAGAACCAACTAAGTGACGCTGAAAGCGTTATTCCACTCTTATTGCGGCCAGCCAAA
CCTGTGCTGATTATGAGAGAAGGATCTCAAACCGATTGTAACGACGATTTGCTGTCCTCT
GAGCAAAGAGCCAAAAAAAGGGAAAGCATAAAAAAATCCGAAGTAGATTGCCCAAAATTT
CCAGCTGAGAAACTTCCGCCCACAACGAAATTTCCTATTAATGAAAATGCCAAGAAGGTT
TTAGATCCAGCCGACCAAAGAGAACTCGAGGCCAATTTGTTAAAAAGGCTTAAAGATATG
GCTAAAAGAAAGAAATCTCGACTAGATGAGAAAGTTGACGAGCTGAGGGATAATTTTATA
GGCTGGAATTATGCTGCTCTACAAGGAAGAACTATTGTGACTGTGGATGCCAAGGAATCA
ACTCCACCGAAAGGATCTGGGCCGGCCACCCCGGCAGGCTCTCCTCCACCTAAAAATGTT
TCTGCACCGCCGACGGGCGGTTCTCCGCCTGCCAAAAGCGGCGCTCCACCACCCCCAAAG
GGGCCACCGCCCGGAACTCCACCACCGCAGACGAAAACTACTTTTGGACCACTTGCTGAT
GCTGATCGAATCTTTACCAATTTATACGGACGGCACGATTGGCGATTGAAGGCAGCAATG
AAGCGCGGTGACTGGTACAAGACGAAGGAGATCATAGCCAAGGGTGACAAGTGGATAGTC
AACGAGATTAAGACATCTGGACTGCGAGGACGCGGTGGCGCCGGATTTCCCAGTGGACTT
AAGTGGTCATTTATGCATAAACCGCCTGATGGAAGACCCAAGTTTCTGGTGGTCAATGCG
GATGAAGGAGAGCCCGGTACTTGCAAGGATCGTGAGATAATGCGCCATGATCCACACAAA
CTGGTAGAGGGATGTCTCATTGCTGGACGGGCTATGGGTGCCAACACTGGTTTTATTTAC
ATTCGCGGAGAGTTTTACAACGAAGCTTGCAATCTTCAGTATGCCATTATTGAGGCCTAT
AAGGCTGGCTACCTGGGAAAGAATGCCTGCGGTTCTGGGTTCGATTTCGATCTTTATGTG
CAACGTGGAGCAGGAGCCTATATTTGCGGTGAGGAAACCTCTCTGATTGAATCCCTGGAG
GGCAAGGCGGGTAAGCCAAGGAACAAGCCTCCCTTTCCGGCTGATATCGGCGTCTTTGGC
TGTCCGTCTACGGTGACCAATGTGGAAACGGTGGCCGTGTCTCCCACTATTTGCCGGCGT
GGTGGCAATTGGTTTGCCAGCTTTGGACGTACCCGAAACTCTGGCACCAAGCTGTTTAAT
ATCTCTGGTCATGTTTGCAACCCTTGTACCGTCGAGGAGGAGATGTCCATGCCAACCAGA
GAGCTTATCGAACGCCATGCTGGCGGAGTGATCGGGGGCTGGGACAATCTACTGGCCATC
ATTCCGGGTGGCTCCTCCACTCCCTGCATTACCAAGGAGCACGCCTCGAGTGCGATTCAC
GACTACGATGGGCTGATGGCAGTGCGTTCGTCCATGGGAACGGGTGCCTTAATTGTTATG
AATAAGGATACGGACATTATCAAGGCCATTGCCCGATTATCGGCTTTCTATAAGCACGAG
AGCTGCGGCCAGTGCACTCCTTGCCGCGAGGGTCTCCACTGGGTGAACATGATCATGCAT
AGATTTGTGACAGGACAGGCGCAAATTGCAGAGATCGATATGCTGTTCGAACTGACGAAG
CAGATCGAGGGACATACCATTTGTGCCCTGGCCGATGGTGCTGCTTGGCCGCCCCAAGGA
CTCATCCGGAACTTCCGACCGGTCATCGAGGAGAGGATCAAGAAGCGGGCGGCCGAGGAC
CAAGCTAAAGCTGAAGCACTCGAAGCCGAACGTTTCCCTTGTCAAACGGTGACTCCTTGT
CCAGAATAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QAPPPGTPPPQTKTKFGPLADEDRIFTNLYGRHDWRLKGALKRGDWYKTKEIVLKGADWIVNEIKTSGLRGRGGAGFPSGMKWSFMNKPGDGRPKYLVVN
..PPPGTPPPQTKT.FGPLAD.DRIFTNLYGRHDWRLK.A.KRGDWYKTKEI..KG..WIVNEIKTSGLRGRGGAGFPSG.KWSFM.KP.DGRPK.LVVN
Retrocopy
KGPPPGTPPPQTKTTFGPLADADRIFTNLYGRHDWRLKAAMKRGDWYKTKEIIAKGDKWIVNEIKTSGLRGRGGAGFPSGLKWSFMHKPPDGRPKFLVVN


Parental protein
ADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGTGYDFDVFMHRGAGAYICGEETALIESL
ADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGA....IYIRGEFYNEA.N.Q.AI.EAY.AG..GKNACG.G.DFD....RGAGAYICGEET.LIESL
Retrocopy
ADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGANTGFIYIRGEFYNEACNLQYAIIEAYKAGYLGKNACGSGFDFDLYVQRGAGAYICGEETSLIESL


Parental protein
EGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPTICRRGGVWFASFGRTRNSGTKLFNISGHVNRPCTVEEEMSIPLKELIERHCGGVTGGWDNLLG
EGK.GKPR.KPPFPAD.GVFGCP.TVTNVETVAV.PTICRRGG.WFASFGRTRNSGTKLFNISGHV..PCTVEEEMS.P..ELIERH.GGV.GGWDNLL.
Retrocopy
EGKAGKPRNKPPFPADIGVFGCPSTVTNVETVAVSPTICRRGGNWFASFGRTRNSGTKLFNISGHVCNPCTVEEEMSMPTRELIERHAGGVIGGWDNLLA


Parental protein
VIPGGSSTPIIPKNVCDDVIMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLISFYKHESCGQCTPCREGIGWMNKIMTRFVKGDAQPAEIDMLWEIS
.IPGGSSTP.I.K......I.D.DGL.A...S.GT.A.IVM.K.TD.IKAIARL..FYKHESCGQCTPCREG..W.N.IM.RFV.G.AQ.AEIDML.E..
Retrocopy
IIPGGSSTPCITKEHASSAIHDYDGLMAVRSSMGTGALIVMNKDTDIIKAIARLSAFYKHESCGQCTPCREGLHWVNMIMHRFVTGQAQIAEIDMLFELT


Parental protein
KQIEGHTICALGDGAAWPVQGLIRHFRPEIEKRMQLHA
KQIEGHTICAL.DGAAWP.QGLIR.FRP.IE.R....A
Retrocopy
KQIEGHTICALADGAAWPPQGLIRNFRPVIEERIKKRA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide