RetrogeneDB ID:
retro_dmel_62
Organism:
Drosophila melanogaster ( Drosophila_melanogaster )
Location:
3R:25028422-25029457 (-)
Status:
KNOWN_PROTEIN_CODING
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
70.55 %
Coverage:
89.25 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
CG4769
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_dmel_62
ATGGCCAACAAATTCAGGAGTCTGAACAGCAAACTTTTCCAGCTGGCCATGAGCGGCATC
CAGCGGACATCGGTGCGTCCGCGGATAAGTTTTCCGGGTCGTGGAAGCGGCTTTACTGGA
AATCGCAAGCTGCTGGGAGCCCTGGGAGCCCTAACCGGAACAGCAGGGCTGCTGATCTAC
GCCCTGGAAACCAGCGTGGATGCCTCCTCGGACTGCGTGCATCCGGCCCACCAGCACTGG
AATCACAAAGGGCTTTTGTCCGCCTTGGACAAGGAGAGCGTGCGTCGAGGTTACACCGTT
TACAAGGAGGTCTGCTCCTCCTGCCACTCATTGCAGTACATGGCCTATCGCAACCTGGTG
GGAGTGTGCATGACGGAGGCGGAGGCCAAGGCCGAGGCGGAGGCCATCACGGTGCGGGAT
GGGCCCAACGAGGAGGGCGAGTACTACGAGCGTCCCGGCAAGCTGTCCGATCACTTCCCC
TCTCCGTACGCCAACGAGGAGGCGGCCCGTTCCGCCAACAATGGCTCCTATCCGCCGGAT
CTCAGCTATATTGTGTCGGCTCGCAAGGGCGGCGAGGATTACGTGTTCTCCCTGCTCACC
GGATACTGTGATCCTCCGGCTGGTTTTGCCCTTCGTGATGGACTGTACTTCAATCCGTAC
TTCTCGGGCGGAGCGATTGCCATGGGCAAGGTAGTTGACAATGAGGTGGTCTCCTTTGAA
GATCCAAATGTGCCTGCTTCGGCCGCCCAAATTGCCAAGGATGTGTGCGTCTTCCTCAAG
TGGACTTCAGAACCGGAGACCGACGAACGTCGCCTGCTGCTCATCAAAGTTACTCTGATT
TCGACCTTTTTGATTGGCATTTCCTACTACATCAAGCGTTTTAAGTGGTCAACGCTCAAG
TCTCGCAAGATCTTCTTCATTCCCGAACTGGAGGCCCAGGCCAAAAGAGAGGCGGAGGAG
GCCGCCAAAGCAGCGCGCAAGGCCAAGGAGCAGGAGTGCAACAAGTGCGAGAACCAGAAC
GAGAAGAAGGACTAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GSWASGNKKLIGALGAITGGVGALIYALEQSVQASGGEVHSPAQLWNHKGLFDALDHQSVRRGYEVYKQVCSACHSMQYIAYRNLVGVTHTEAEAKAEAE
GS...GN.KL.GALGA.TG..G.LIYALE.SV.AS...VH...Q.WNHKGL..ALD..SVRRGY.VYK.VCS.CHS.QY.AYRNLVGV..TEAEAKAEAE
Retrocopy
GSGFTGNRKLLGALGALTGTAGLLIYALETSVDASSDCVHPAHQHWNHKGLLSALDKESVRRGYTVYKEVCSSCHSLQYMAYRNLVGVCMTEAEAKAEAE


Parental protein
QITVKDGPDDTGNYYTRPGKLSDYFPSPYPNEEAARAANNGAYPPDLSYIVSARKGGEDYIFSLLTGYHDAPAGVVLREGQYFNPYFPGGAISMAQVLYN
.ITV.DGP...G.YY.RPGKLSD.FPSPY.NEEAAR.ANNG.YPPDLSYIVSARKGGEDY.FSLLTGY.D.PAG..LR.G.YFNPYF.GGAI.M..V..N
Retrocopy
AITVRDGPNEEGEYYERPGKLSDHFPSPYANEEAARSANNGSYPPDLSYIVSARKGGEDYVFSLLTGYCDPPAGFALRDGLYFNPYFSGGAIAMGKVVDN


Parental protein
EVIEYED-GTPPTQSQLAKDVATFLKWTSEPEHDDRKQLLIKVIGILGFLTVISYYIKRHKWSSLKSRKIVFVPK
EV...ED...P....Q.AKDV..FLKWTSEPE.D.R..LLIKV..I..FL..ISYYIKR.KWS.LKSRKI.F.P.
Retrocopy
EVVSFEDPNVPASAAQIAKDVCVFLKWTSEPETDERRLLLIKVTLISTFLIGISYYIKRFKWSTLKSRKIFFIPE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide