RetrogeneDB ID:
retro_dmel_63
Organism:
Drosophila melanogaster ( Drosophila_melanogaster )
Location:
3R:16573990-16574740 (-)
Status:
KNOWN_PROTEIN_CODING
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
75.1 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
Pros28.1
Parental gene aliases:
No gene alias available
Parental gene description:
Proteasome 28kD subunit 1 [Source:FlyBase gene name;Acc:FBgn0004066]

Genomic region (view in browser)





>retro_dmel_63
ATGTCCTCACGCTACGGTCGAGCTCTAACCATATTCTCGCCGGATGGCCACCTGTTGCAG
GTGGAGTACGCCCAGGAAGCTGTTCGAAAGGGCTCCACAGCGGTCGGCGTTCGTGGAGCC
AATTGTGTGGTGCTGGGTGTGGAGAAGAGCTCGGTGTCCGAGATGCAGGAGGATCGGACG
GTGCGCAAGATCAGCATGCTCGATCGCCACGTGGCGTTGGCATTTGCCGGTCTCACGGCC
GATGCACGGATCCTTATAAATCGAGGGCAGGTCGAGTGCCAGAGCCATCGACTCAACTTC
GAAAACCAGGTGACCCTCGAGTACATCACCAGATACCTTGCCCAGCTCAAGCAGAAGTAC
ACGCAGTGCAATGGACGTCGTCCTTTCGGTATATCGTGTCTAATAGGAGGCATTGACGCC
GATGGCTCTGCACGTCTCTTTCATACCGAACCATCCGGGATATTCCACGAGTACAAGGCG
ACCGCCACTGGGCGTTGGGCAAATACTGTGAGGGAGTTTTTTGAGAAGGCCTATAGCGAT
CATGAAGTGACAACCAAATGTGATGCCATCAAACTAGCCATGCGTGCCCTTCTCGAAGTA
ACCCAGATGAGCCAGATGCGCCTGGAGGTGGCCGTATTGGAGAATGGCAAGCCAATGAAA
ATGCTGGACAGTGTAGTAATTTCGGAAATAGTCAAGATCGTTCAGAACGAAAAGGAGCTC
CAAGCGAAGGCACATAAAATGAAGAGATGA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSSRYDRAVTIFSPDGHLLQVEYAQEAVRKGSTAVGVRGANCVVLGVEKKSVAQLQEDRKVRKICMLDNHVVMAFAGLTADARIMINRAQVECQSHRLNV
MSSRY.RA.TIFSPDGHLLQVEYAQEAVRKGSTAVGVRGANCVVLGVEK.SV...QEDR.VRKI.MLD.HV..AFAGLTADARI.INR.QVECQSHRLN.
Retrocopy
MSSRYGRALTIFSPDGHLLQVEYAQEAVRKGSTAVGVRGANCVVLGVEKSSVSEMQEDRTVRKISMLDRHVALAFAGLTADARILINRGQVECQSHRLNF


Parental protein
EDPVTLEYITRFIAQLKQKYTQSNGRRPFGISCLIGGFDADGSAHLFQTEPSGIFYEYKANATGRSAKVVREFFEKSYREEEVANEHGAVKLAIRALLEV
E..VTLEYITR..AQLKQKYTQ.NGRRPFGISCLIGG.DADGSA.LF.TEPSGIF.EYKA.ATGR.A..VREFFEK.Y...EV.....A.KLA.RALLEV
Retrocopy
ENQVTLEYITRYLAQLKQKYTQCNGRRPFGISCLIGGIDADGSARLFHTEPSGIFHEYKATATGRWANTVREFFEKAYSDHEVTTKCDAIKLAMRALLEV


Parental protein
AQSGQNNLEVAIMENGKPLKMLDTDVITDYVKIIEKEKEEELEKKKQKK
.Q..Q..LEVA..ENGKP.KMLD..VI...VKI...EKE......K.K.
Retrocopy
TQMSQMRLEVAVLENGKPMKMLDSVVISEIVKIVQNEKELQAKAHKMKR


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide