RetrogeneDB ID:
retro_dmel_67
Organism:
Drosophila melanogaster ( Drosophila_melanogaster )
Location:
3R:1251465-1252899 (-)
Status:
KNOWN_PROTEIN_CODING
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
54.75 %
Coverage:
90.5 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
CkIalpha
Parental gene aliases:
No gene alias available
Parental gene description:
Casein kinase Ialpha [Source:FlyBase gene name;Acc:FBgn0015024]

Genomic region (view in browser)





>retro_dmel_67
ATGGCGGAACGGGAAAAGGGGCGTGCCAAGGACGACAGACGTTGGCAAGGCCGTTCCGAT
GTTCACCAATCCAAGCCGCAGATCCGAAAGGAGCGCCGCCATCCGCCACAGCCAAATCAT
CCTCATGAGAAGGACCAGCGACAAGATCGTCGGTTCTCAGAGGAGAAGCAATCCCTACCG
GAAATTATAGTGGCGGGAAAGTACCGTTTATTGAAGCGTATTGGAAACGGATCCTTCGGC
GAACTATTCCAGGCCGAGGGCCTCAAGTACCACGAGAAGGTGGCCATAAAGCTGGAGAGC
TCCACGGTCAAGCACCCATTGCTGCCACGCGAGGCCAGGATCTATGGCATCCTGCAGGGC
GGACTGGGCATCCCGCATGTGAAGCACTATGCCACCGAGGGGGCGTACAATGTCATGGTG
ATGGACCTCCTGGGGCCCACGCTGGAGGATCTGCTAAACCTCTGCTCGCGCTCCTTTAGC
ATGAAGACCACCCTGATGCTGGCCGACCAGATCCTTGCCCGCGTGGAGCTGCTCCACCGG
AGATGCTTTATCCACCGGGACATCAAGCCGGACAACTTCCTGATGGGCCTGAACCGCCAC
CAGACTCAGGTGTACATGATTGACTTCGGACTGGCCAAAAAGTTCTACAGCCTGCGCACC
CAGAAGCACATCGGCTACACGGAGAACCGGGACCTGGTAGGTACGGCCCGGTACGCCAGT
GTGCGGGCCCATTACGCGGAGCAGAGTCGTCGGGATGACCTAGAGTCCGTGGGCTACCTG
CTGCTCTACTTCCAGCGGGGTCGTCTTCCCTGGCAGGGAATCCGGGCGCAGTCGCAGGCC
CAGAAGTACGAGAAGATAGCTGAGTACAAGGCCAACATCCCACTCCAGCAACTCTGCTCC
GGATTGCCTGTCGAGTTCTTCATGTATCTGAAGTACTGCCGCAAGCTGCACTTCGCCGAG
AAGCCGGATTACGTGTATCTGCAGCAGCTGTTCAAGGTGCTCTTCCGGAACCAGTACAAG
GTGTGTGACTTCCTCTTCGACTGGGTCGTTTTGAAGCGAGAGTCGCCGGAGCAACAATCG
CAGCAAAAGGGTAGGGAAAGGGACAGGGGTGGAAAAAGGAACGTGGTGGTGCAGAAGGAG
AGGCATCGAAACAAGGATAGGGATAGTGATACGCAGAGGTGTCGAATTAAGAATGGGGGA
GATCTGCTCGAGATCGAGGAAAATGAAAGTACCACTGGGGAAGACCCAAACGAAGATAAG
CCTCAAAAAAAGCATGGCAAGGCCTGCTCCTGCAGCTACCACCTCCAGAAGAAGCGCCTC
CAGGATCGGGATAGGAGGGCGCCTCTGATGACCGAGCGGAGGATCCTTTCGGGGGAGCAG
GAGCAGGAGCTGGAGCTGGAGCTGCGGGGGTCCCCTCAGATGCCCTGTCTTTGA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KESRPEIIVGGKYRVIRKIGSGSFGDIYLGMSIQSGEEVAIKMESAHARHPQLLYEAKLYRILSGGVGFPRIRHHGKEKNFNTLVMDLLGPSLEDLFNFC
K.S.PEIIV.GKYR....IG.GSFG...........E.VAIK.ES....HP.L..EA..Y.IL.GG.G.P...H...E...N..VMDLLGP.LEDL.N.C
Retrocopy
KQSLPEIIVAGKYRLLKRIGNGSFGELFQAEGLKYHEKVAIKLESSTVKHPLLPREARIYGILQGGLGIPHVKHYATEGAYNVMVMDLLGPTLEDLLNLC


Parental protein
TRHFTIKTVLMLVDQMIGRLEYIHLKCFIHRDIKPDNFLMGIGRHCNKLFLIDFGLAKKFRDPHTRHHIVYREDKNLTGTARYASINAHLGIEQSRRDDM
.R.F..KT.LML.DQ...R.E..H..CFIHRDIKPDNFLMG..RH......IDFGLAKKF....T..HI.Y.E...L.GTARYAS..AH...EQSRRDD.
Retrocopy
SRSFSMKTTLMLADQILARVELLHRRCFIHRDIKPDNFLMGLNRHQTQVYMIDFGLAKKFYSLRTQKHIGYTENRDLVGTARYASVRAHYA-EQSRRDDL


Parental protein
ESLGYVMMYFNRGVLPWQGMKANTKQQKYEKISEKKMSTPIEVLCKGSPAEFSMYLNYCRSLRFEEQPDYMYLRQLFRILFRTLNHQYDYIYDWTMLKQK
ES.GY...YF.RG.LPWQG..A....QKYEKI.E.K...P...LC.G.P.EF.MYL.YCR.L.F.E.PDY.YL.QLF..LFR......D...DW..LK..
Retrocopy
ESVGYLLLYFQRGRLPWQGIRAQSQAQKYEKIAEYKANIPLQQLCSGLPVEFFMYLKYCRKLHFAEKPDYVYLQQLFKVLFRNQYKVCDFLFDWVVLKRE


Parental protein
THQGQ
....Q
Retrocopy
SPEQQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide