RetrogeneDB ID:
retro_dmel_71
Organism:
Drosophila melanogaster ( Drosophila_melanogaster )
Location:
3R:2939993-2941481 (-)
Status:
KNOWN_PROTEIN_CODING
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
70.75 %
Coverage:
60.29 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
Mlp60A
Parental gene aliases:
No gene alias available
Parental gene description:
Muscle LIM protein at 60A [Source:FlyBase gene name;Acc:FBgn0259209]

Genomic region (view in browser)





>retro_dmel_71
ATGCCTTCCTTCCAACCGATCGAGGCCCCCAAGTGTCCGCGCTGCGGCAAGAGTGTCTAC
GCTGCCGAAGAGCGTCTGGCTGGCGGCTATGTATTCCACAAGAACTGCTTCAAGTGCGGA
ATGTGCAACAAATCCCTGGACTCCACCAACTGCACAGAGCACGAGCGCGAGCTCTACTGC
AAGACGTGCCACGGTCGCAAGTTCGGGCCGAAAGGTTACGGCTTCGGCACTGGAGCTGGC
ACCCTCTCCATGGACAACGGGTCACAGTTCCTGCGCGAGAACGGCGATGTGCCGTCCGTA
AGGAATGGAGCCCGCCTGGAACCCAGGGCTATTGCTCGTGCCCCCGAAGGTGAGGGCTGT
CCTCGTTGCGGTGGCTATGTGTACGCCGCCGAACAGATGTTAGCCCGCGGTCGCAGCTGG
CACAAGGAGTGCTTCAAGTGCGGTACCTGCAAGAAGGGTCTGGACTCGATCCTGTGCTGC
GAGGCTCCGGACAAGAACATCTACTGCAAGGGCTGCTATGCCAAGAAGTTTGGACCCAAG
GGCTATGGTTATGGCCAGGGCGGTGGTGCTCTCCAGTCCGACTGCTATGCTCACGACGAC
GGAGCACCGCAAATCCGTGCCGCCATTGATGTGGACAAGATCCAGGCCCGTCCGGGTGAG
GGTTGCCCACGTTGCGGCGGTGTGGTCTACGCAGCGGAGCAGAAGCTTTCCAAGGGTCGG
GAGTGGCACAAGAAGTGCTTCAACTGCAAGGATTGCCACAAGACTCTGGACTCGATCAAT
GCCAGTGATGGTCCCGATCGTGATGTGTACTGCCGCACCTGCTACGGCAAGAAGTGGGGA
CCACATGGCTATGGATTCGCATGCGGCTCTGGTTTCCTGCAGACCGATGGCTTGACCGAG
GATCAGATCAGCGCCAACAGGCCCTTCTATAACCCGGACACCACGTCAATTAAGGCCCGT
GACGGCGAAGGCTGTCCCCGGTGCGGAGGAGCCGTATTCGCCGCCGAGCAACAGCTGTCC
AAGGGCAAGGTGTGGCACAAGAAGTGCTACAACTGCGCCGACTGCCACCGGCCATTGGAC
TCGGTCCTGGCCTGCGATGGACCCGATGGCGACATCCACTGCCGCGCCTGCTACGGCAAG
CTCTTCGGCCCCAAGGGCTTTGGTTACGGCCACGCCCCCACTCTAGTGTCAACCAGTGGC
GAGAGCACCATCCAGTTCCCAGATGGCCGTCCTCTGGCCGGACCCAAGACTTCGGGCGGC
TGCCCGCGTTGCGGTTTCGCCGTGTTCGCCGCCGAGCAGATGATCAGCAAGACCAGGATC
TGGCACAAGAGGTGCTTCTACTGCTCGGATTGCCGCAAATCGCTGGACTCGACCAACCTG
AACGATGGACCCGACGGCGATATCTACTGCCGAGCCTGCTACGGCCGCAATTTTGGACCC
AAGGGAGTGGGCTACGGTCTGGGCGCGGGCGCTTTGACAACGTTCTAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
DMAPKA-SIINVEQIQAPIGEGCPRCGGVVFAAEQVLSKGRSWHRKCFKCRDCTKTLDSIIACDGPDNEVYCKTCYGKKWGPHGYGFACGSSFLQTDGIT
D.AP.....I.V..IQA..GEGCPRCGGVV.AAEQ.LSKGR.WH.KCF.C.DC.KTLDSI.A.DGPD..VYC.TCYGKKWGPHGYGFACGS.FLQTDG.T
Retrocopy
DGAPQIRAAIDVDKIQARPGEGCPRCGGVVYAAEQKLSKGREWHKKCFNCKDCHKTLDSINASDGPDRDVYCRTCYGKKWGPHGYGFACGSGFLQTDGLT


Parental protein
EENLASERPFVAPDTTSIMAPDGEGCPRCGGAVFAAELQLSKGKMYHRKCFNCARCTRPLDSVLACDGPDDNIYCKLCYAKLFGPKGVGYGHTPTLVSTN
E......RPF..PDTTSI.A.DGEGCPRCGGAVFAAE.QLSKGK..H.KC.NCA.C.RPLDSVLACDGPD..I.C..CY.KLFGPKG.GYGH.PTLVST.
Retrocopy
EDQISANRPFYNPDTTSIKARDGEGCPRCGGAVFAAEQQLSKGKVWHKKCYNCADCHRPLDSVLACDGPDGDIHCRACYGKLFGPKGFGYGHAPTLVSTS


Parental protein
YEYTPSCWGTIDRNGQKSENGCPRCGFMVFAAEQVKSAKNVWHKLCFYCMECRKYLDSTNLNDGPDGGIYCRSCYAKFYGPKGVGYGIGAGTLT
.E.T..........G.K...GCPRCGF.VFAAEQ..S....WHK.CFYC..CRK.LDSTNLNDGPDG.IYCR.CY....GPKGVGYG.GAG.LT
Retrocopy
GESTIQFPDGRPLAGPKTSGGCPRCGFAVFAAEQMISKTRIWHKRCFYCSDCRKSLDSTNLNDGPDGDIYCRACYGRNFGPKGVGYGLGAGALT


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide