RetrogeneDB ID:
retro_dmel_75
Organism:
Drosophila melanogaster ( Drosophila_melanogaster )
Location:
2L:9013049-9013922 (-)
Status:
KNOWN_PROTEIN_CODING
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
69.12 %
Coverage:
89.47 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
Rcd-1
Parental gene aliases:
No gene alias available
Parental gene description:
Required for cell differentiation 1 ortholog [Source:FlyBase gene name;Acc:FBgn0031047]

Genomic region (view in browser)





>retro_dmel_75
ATGAGTGCGGAACCAAGTCCGGTAATGAGTCCCCAGCAGCAGGCCGAGCGGGAGAAGGTG
TACCAGTTGATCATCGAGCTGGCCTATCCTGCCACGCGGGAGACCGCTCTGCTGGAGCTG
AGCAAGAACACCTATGCGGACCTGGCCCCCATGCTGTGGAAAAGCGTCGGTACCACCTGC
ACCCTGCTGCAGGAGATCGTCAACATATACCCCATAATAACGACGCCCGTTTTGAAGGCC
AACCAGTCGAACCGCGTGTGCTACGCCCTGACTTTGCTACAGTGCGTCGCCTCGCATCCG
GAGACTCGCCCGGCCTTCCTGCGGGACCAGATACCGATGTACTTGTACCCCTTCTTGTCG
ACCACGTTCAAGAGCAGGCCCTTCGAGCAGCTGCGCCTGACCACGCTGGGCGTGATTAAT
GCTCTGGCCGAGACCGGTGATACGGAGGTCCTCATCTTCCTGATATGGAGCGAGGTCGTG
CCTCACTGTCTGACCAATATGGTCAGGGGATCGAAGCTGACCAAGATCGCGGCCACTTCA
ATCCTTGAGAAGATACTGCTCGATGAGATGGGTCTGACGTACATTTGCGAGAACCACGAT
CGCTTCTCGCAGGTGGCCATCACCCTGGGCAAAATGGTCATCCATATGTTGAAGTTTCCA
TGCCTCCGGGTGCTGAAGCATGTGGTGCGCTGCTATCTACTACTTACGGAAAATGCGCGC
GCTCGCAGTGCACTTAGAGTGTGTCTGCCGGATCTGCTGCGTGACGGCACCTTCACGTCG
CTCGTGCAACATGACACGTGCACCAAGCAGTGGCTGCAGATGCTGCTCAAGAACCTGCAG
ACAAACGCCGTCAACCCAATGGGCTCCTCCTAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QQQTEQEKVYQWINELAHPDTRETALLELSKKRETDLAPMLWNSFGTACALLQEIVNIYPSITPPTLTAHQSNRVCNALALLQCVASHPETRTAFLQAQI
QQQ.E.EKVYQ.I.ELA.P.TRETALLELSK....DLAPMLW.S.GT.C.LLQEIVNIYP.IT.P.L.A.QSNRVC.AL.LLQCVASHPETR.AFL..QI
Retrocopy
QQQAEREKVYQLIIELAYPATRETALLELSKNTYADLAPMLWKSVGTTCTLLQEIVNIYPIITTPVLKANQSNRVCYALTLLQCVASHPETRPAFLRDQI


Parental protein
PLYLYPFLSTTSKTRPFEYLRLTSLGVIGALVKTDEQEVITFLLTTEIVPLCLSIMDSGSELSKTVATFIIQKILLDESGLSYICQTYERFSHVAITLGK
P.YLYPFLSTT.K.RPFE.LRLT.LGVI.AL..T...EV..FL...E.VP.CL..M..GS.L.K..AT.I..KILLDE.GL.YIC....RFS.VAITLGK
Retrocopy
PMYLYPFLSTTFKSRPFEQLRLTTLGVINALAETGDTEVLIFLIWSEVVPHCLTNMVRGSKLTKIAATSILEKILLDEMGLTYICENHDRFSQVAITLGK


Parental protein
MVIQLAKDPCARLLKHVVRCYLRLSDNTRARKALGQCLPDQLRDGTFALCLQEDKSTKQWLQMLLKNLELGA
MVI...K.PC.R.LKHVVRCYL.L..N.RAR.AL..CLPD.LRDGTF....Q.D..TKQWLQMLLKNL...A
Retrocopy
MVIHMLKFPCLRVLKHVVRCYLLLTENARARSALRVCLPDLLRDGTFTSLVQHDTCTKQWLQMLLKNLQTNA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide