RetrogeneDB ID:
retro_dmel_80
Organism:
Drosophila melanogaster ( Drosophila_melanogaster )
Location:
2R:12661924-12663055 (+)
Status:
KNOWN_PROTEIN_CODING
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
51.78 %
Coverage:
97.07 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
Arp87C
Parental gene aliases:
No gene alias available
Parental gene description:
Actin-related protein 87C [Source:FlyBase gene name;Acc:FBgn0011745]

Genomic region (view in browser)





>retro_dmel_80
ATGAGCAGCGAGGTAGATAGTAATTCACACCACGCCGCAGTGGTTATTGACAACGGCTCT
GGAGTATGTAAGGCTGGATTCTCCCCAGAAGATACTCCCCGTGCTGTCTTCCCGTCGATT
GTGGGCAGACCTCGTCACCTGAACGTCCTGCTGGATTCCGTGATCGGTGATAGTGTTATT
GGCGAGGCGGCAGCCCGAAAAAGGGGAATACTAACCCTAAAGTATCCCATCGAGCACGGA
ATGGTCAAGAACTGGGATGAAATGGAGATGGTTTGGCAGCACACGTACGAGCTCTTGCGG
GCGGATCCAATGGATTTGCCGGCTCTACTCACCGAAGCCCCACTGAATCCGAAGAAGAAT
AGAGAGAAGATGACAGAGATTATGTTCGAACACTTTCAGGTGCCAGCTTTTTATGTAGCA
GTTCAGGCTGTGCTCTCACTTTACGCCACCGGGCGTACTGTGGGCATTGTGGTGGACTCG
GGTGATGGTGTGACGCACACGGTACCGATCTACGAAGGATTTGCCCTGCCCCACGCCTGT
GTACGAGTTGATCTGGCCGGCAGGGACCTCACCGATTATCTATGCAAGCTGCTTCTGGAG
AGGGGCGTTACAATGGGCACCTCTGCTGAACGGGAAATCGTGCGTGAAATCAAGGAGAAA
CTCTGCTATGTGTCAATGAACTATGCCAAGGAAATGGATCTCCACGGAAAGGTGGAAACC
TATGAGCTGCCAGATGGGCAGAAAATCGTTTTGGGCTGCGAGAGATTCCGCTGCCCGGAG
GCTCTCTTCCAACCCAGTTTGCTGGGTCAGGAGGTGATGGGCATCCACGAGGCCACCCAT
CACTCGATAACCAACTGCGACATGGATCTGCGAAAGGATATGTATGCGAACATTGTTCTC
TCTGGCGGTACGACCATGTTTCGTAACATCGAGCATAGATTCCTGCAAGACCTAACCGAA
ATGGCTCCACCATCCATCCGAATCAAGGTTAACGCTAGTCCAGACCGCAGATTCTCCGTT
TGGACGGGTGGTTCCGTCTTGGCCTCACTCACGAGCTTCCAAAACATGTGGATCGACAGC
TTGGAGTACGAAGAAGTTGGTTCCGCCATAGTCCATCGAAAGTGTTTTTAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VVIDNGSGVIKAGFAGEHIPKCRFPNYIGRPKHVRVMAGALEGDIFVGPKAEEHRGLLSIRYPMEHGIVTDWNDMERIWSYIYSKEQLATFTEDHPVLLT
VVIDNGSGV.KAGF..E..P...FP...GRP.H..V......GD...G..A...RG.L...YP.EHG.V..W..ME..W...Y..E.L.....D.P.LLT
Retrocopy
VVIDNGSGVCKAGFSPEDTPRAVFPSIVGRPRHLNVLLDSVIGDSVIGEAAARKRGILTLKYPIEHGMVKNWDEMEMVWQHTY--ELLRADPMDLPALLT


Parental protein
EAPLNPRRNREKAAEFFFEGINAPALFVSMQAVLSLYATGRVTGVVLDSGDGVTHAVPIYEGFAMPHSIMRVDIAGRDVTRYLKTLIRREGFNFRSTAEF
EAPLNP..NREK..E..FE....PA..V..QAVLSLYATGR..G.V.DSGDGVTH.VPIYEGFA.PH...RVD.AGRD.T.YL..L....G......AE.
Retrocopy
EAPLNPKKNREKMTEIMFEHFQVPAFYVAVQAVLSLYATGRTVGIVVDSGDGVTHTVPIYEGFALPHACVRVDLAGRDLTDYLCKLLLERGVTMGTSAER


Parental protein
EIVRSIKEKVCYLATNPQKEETVETEKFAYKLPDGKIFEIGPARFRAPEVLFRPDLLGEECEGIHDVLMYSIEKSDMDLRKMLYQNIVLSGGSTLFKGFG
EIVR.IKEK.CY...N..KE.........Y.LPDG.....G..RFR.PE.LF.P.LLG.E..GIH.....SI...DMDLRK..Y.NIVLSGG.T.F....
Retrocopy
EIVREIKEKLCYVSMNYAKEMDLHGKVETYELPDGQKIVLGCERFRCPEALFQPSLLGQEVMGIHEATHHSITNCDMDLRKDMYANIVLSGGTTMFRNIE


Parental protein
DRLLSELKKHSAKDLKIRIAAPQERLYSTWMGGSILASLDTFKKMWISKREYEEEGQKAVHRKTF
.R.L..L.........I...A...R..S.W.GGS.LASL..F..MWI...EYEE.G...VHRK.F
Retrocopy
HRFLQDLTEMAPPSIRIKVNASPDRRFSVWTGGSVLASLTSFQNMWIDSLEYEEVGSAIVHRKCF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide