RetrogeneDB ID:
retro_ecab_1
Organism:
Horse ( Equus_caballus )
Location:
12:12386414-12387311 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
86.15 %
Coverage:
96.42 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_1
ATGGCCAGTACAAATAACGTGACTGAGTTAATATTCACTGGCCTTTTCCGGGATCCAGAT
GTGCAGAGAGTGTGTTTTGTGGCATTTCTCATTGTGTACTTGGCCACAGTGGTGGGCAAT
GGCCTCATCGTTCTGACGGTTAGCATCAGCAAAAGTCTCAATTCCCCCATGTACTTCTTC
CTAAGCCAGCTGTCTCTGGTGGAGATCAGTTACTCCTCTACGGTTGTCCCTAAATTCATC
ACAGACTTACTTGCCAAGATTAAAACCATCTCCCTGGAGGGCTGTCTGGCTCAGATATTC
TTCTTCCACTTCTTTGGAGTCACTGAGATCCTCCTGCTTGTGGTGATGGCCTATGACCGC
TATGTGGCCATCTGCAAGCCTCTTCATTATATGAACATTATGAGCCACCAAGTGTGTCAA
GTACTGGTGGCTGGTTCCTGGCTGGGAGGCTTTGTTCACTCCATAATTCAGATTCTCATC
ACCATCCAATTGCCCTTCTGTGGTCCCAATGTGATTGACCACTACTTCTGTGATCTCCAG
CCATTGTTCAAGCTTACCTGCACTGACACCTTTGTGGAGGGGGTTATTGTGTTGGCCAAT
AGTGGCTTAATTGCTTTGTGCTCCTTCCTCATCTTGGTGACATCCTATATTGTCATCCTG
GTCAACGTTAGGAACCATTCTGCAGAGGGAAAGCGCAAAGCCCTCTCTACCTGTGCCTCT
CACATCACAGTGGTCATCTTGTTCTTCGGACCTGCCATCTTCTTCTACATGCGACCCTCC
TCCACCTTCACTGAGGACAAACTAGTGGCTGTGTTCTATACTGTCATCACCCCAATGCTG
AACCCCATCATCTACACACTCAGAAATGCTGAGGTGAAAATGGCCATGAGGAGGTTG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.1
SRP021940_embryo 0.26
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.03
SRP021940_testis 0.12

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
NMTELIFTGIFQDPEVQRVCFEVFILVYLATVVGNGLIILMVSISNSLHSPMYFFLSHLSLAEINCNYSSTVVPKFITDLLAKIKTISLEGCLAQIFFFH
N.TELIFTG.F.DP.VQRVCF..F..VYLATVVGNGLI.L.VSIS.SL.SPMYFFLS.LSL.EI...YSSTVVPKFITDLLAKIKTISLEGCLAQIFFFH
Retrocopy
NVTELIFTGLFRDPDVQRVCFVAFLIVYLATVVGNGLIVLTVSISKSLNSPMYFFLSQLSLVEIS--YSSTVVPKFITDLLAKIKTISLEGCLAQIFFFH


Parental protein
FFGVTEIFLLVVMAYDRYVAICKPLHYMNIMSNLLCYVMVAGSWLGGFFHSIIQILITIQLPFCGPNVIDHYFCDLHPLFKLACSDTFVEGVIVLVNSGL
FFGVTEI.LLVVMAYDRYVAICKPLHYMNIMS...C.V.VAGSWLGGF.HSIIQILITIQLPFCGPNVIDHYFCDL.PLFKL.C.DTFVEGVIVL.NSGL
Retrocopy
FFGVTEILLLVVMAYDRYVAICKPLHYMNIMSHQVCQVLVAGSWLGGFVHSIIQILITIQLPFCGPNVIDHYFCDLQPLFKLTCTDTFVEGVIVLANSGL


Parental protein
ISVFSFLLLVSSYIIIMYNLRNHSAEGRRKALSTCASHITVVILFFGPAIFLYMRPSSTFTEDKLVAVFYTVITPMLNPIIYTLRNAEMKIAMRRL
I...SFL.LV.SYI.I..N.RNHSAEG.RKALSTCASHITVVILFFGPAIF.YMRPSSTFTEDKLVAVFYTVITPMLNPIIYTLRNAE.K.AMRRL
Retrocopy
IALCSFLILVTSYIVILVNVRNHSAEGKRKALSTCASHITVVILFFGPAIFFYMRPSSTFTEDKLVAVFYTVITPMLNPIIYTLRNAEVKMAMRRL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide