RetrogeneDB ID:
retro_ecab_10
Organism:
Horse ( Equus_caballus )
Location:
X:21063774-21064287 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
75.88 %
Coverage:
98.27 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
PTP4A1
Parental gene aliases:
No gene alias available
Parental gene description:
protein tyrosine phosphatase type IVA, member 1 [Source:HGNC Symbol;Acc:9634]

Genomic region (view in browser)





>retro_ecab_10
ATCACTGTGATGAACCGTCCTGCTCCTGTAGAGATTGCGTACAGGAATATGAGATTTCTT
ATTGCGCACAGTCCAACCAATGCCTCCTTAAACAAATTCTTACAGGAACTTAAGAGGAAC
GGAGTTACCATCATAGTAAGAGTGTGTGAAGCAACTTACAACACGGCTATTTTGGAAAAA
GAAGGCATCCAGGTTCTGGACTGGCCTTTTGATGATGGTGCACCACCACCCAGGCACATT
GTAGAGAAGTGGTTAAAACTTATAAAGCAGAAATTTCGCCAAGATCCTGGTTCTTGTATT
GCGGTTCACTGTGCAGCAGGTCTTGGGAGAGCTCCAGTGCTGGTTGCCATAGCATTAATT
GAAGGTGGAATGAAATCTGAAGATGCGGTGCAATTCATAAGACAAAAGCGACGTGGAGCT
TTTAACAGCAAGCAACTTTTGTATTTGGAGAAGTACCGTCCTACAATGTGCTTTCGCCTC
AGAAACTCCAGATGCAACTGTTTCGTTCAGTAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 5.04

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MNRPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPFDDGAPPSNQIVDDWLSLVKIKFREEPGCCIAVH
MNRPAPVE..Y.NMRFLI.H.PTNA.LNKF..ELK..GVT.IVRVCEATY.T...EKEGI.VLDWPFDDGAPP...IV..WL.L.K.KFR..PG.CIAVH
Retrocopy
MNRPAPVEIAYRNMRFLIAHSPTNASLNKFLQELKRNGVTIIVRVCEATYNTAILEKEGIQVLDWPFDDGAPPPRHIVEKWLKLIKQKFRQDPGSCIAVH


Parental protein
CVAGLGRAPVLVALALIEGGMKYEDAVQFIRQKRRGAFNSKQLLYLEKYRPKMRLRFKDSNGHRNNCCVQ
C.AGLGRAPVLVA.ALIEGGMK.EDAVQFIRQKRRGAFNSKQLLYLEKYRP.M..R...S...R.NC.VQ
Retrocopy
CAAGLGRAPVLVAIALIEGGMKSEDAVQFIRQKRRGAFNSKQLLYLEKYRPTMCFRLRNS---RCNCFVQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide