RetrogeneDB ID:
retro_ecab_100
Organism:
Horse ( Equus_caballus )
Location:
11:50206903-50207332 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
88.03 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
BIRC5
Parental gene aliases:
No gene alias available
Parental gene description:
baculoviral IAP repeat containing 5 [Source:HGNC Symbol;Acc:593]

Genomic region (view in browser)





>retro_ecab_100
ATGGGTGCCCCGTTGTTGCCCCCGGCCTGGCAGCTCTCCCTCAAGGACCACCGCGTCTCT
ACCTTCAAGAACTGGCCCTTCTTGGAGGGCTGCGCCTGTACCCCGGAGTGGATGGCGGTG
GCCGGCTCCATCCACTGTCCCACTGAGAATGAGCCCAACTTCGCGCAGGGTTTCTTCTGC
TTTAAGGAGCTGCAAGGCTGGGAGCCAGACGAGGACCCCGTAGAGGAGCATGAAAAGCAT
TCATCCGGCTGTGCTTTCCTGTCTGTCAAGAAGCGGTTTGAAGAATTAACCCTCAGTGAA
TTTTTGAAACTGGACAAAGAAAGAGCCAAGAACAAAGTTGCAAAGGAAACCAACAGTAAC
CAGAAAGAATTTGAAGAAACTGCAAAGAAGGTTCATTATGCCATTGAGCAGCTGGCTGCC
TTGGAGTGA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.05
SRP021940_embryo 0.22
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MGAPSLPPAWQLYLKDHRVSTFKNWPFLEGCACTPERMAAAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEEHKKHSSGCAFLSVKKQFEELTLSE
MGAP.LPPAWQL.LKDHRVSTFKNWPFLEGCACTPE.MA.AG.IHCPTENEP..AQ.FFCFKEL.GWEPD.DP.EEH.KHSSGCAFLSVKK.FEELTLSE
Retrocopy
MGAPLLPPAWQLSLKDHRVSTFKNWPFLEGCACTPEWMAVAGSIHCPTENEPNFAQGFFCFKELQGWEPDEDPVEEHEKHSSGCAFLSVKKRFEELTLSE


Parental protein
FLKLDKERAKNKIAKETNNKQKEFEETAKKVRYAIEQLAALE
FLKLDKERAKNK.AKETN..QKEFEETAKKV.YAIEQLAALE
Retrocopy
FLKLDKERAKNKVAKETNSNQKEFEETAKKVHYAIEQLAALE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide