RetrogeneDB ID:
retro_ecab_1000
Organism:
Horse ( Equus_caballus )
Location:
8:74295047-74295423 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
61.83 %
Coverage:
64.82 %
Frameshifts:
2
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_1000
TTAGAGGAAAGAAATATAGAAATACTGCAGATGGAGGATGAGAGAGAGCTAAGACTAAAA
AAACATGAAGAAATTCTCCAAGAAATATCCAACTCAATAAGGAATTGCAACATAAGGATT
ATAAGCATTCCAGAGAAAGGGAGAATGGAGCAGAAAACTTGTTCCAAGAAATAATAGCTA
AAAACTTCCCAAACCTGGGGAAGGAGCTGGAATTACACGTAAATGAAGCTAACAGAACTC
CTAATTACAACAATGTAAAAGACCTTCTCCAAGGCATCTATTAGTAAAGCTGCCAAAAAG
AAATGACAGACGAAAAATATTAAGAGCAGCAAGGCACAAGAAAGTAACTTACAAAGGAAC
CCCTATCAGGCTTTCA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.06
SRP021940_cerebellum 0.15
SRP021940_embryo 0.05
SRP021940_placental_villous 0.18
SRP021940_synovial_membrane 0.05
SRP021940_testis 0.06

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LEDRNTEMLKMEEERELRLKRSEDIFQEIYNPIRKRNIRIISIPTGE-ERQNRRESLFKEIITENFLNLGKGLEIQVKEANRTPNYINV-ERPSPRHILV
LE.RN.E.L.ME.ERELRLK..E.I.QEI.N.I..RN..I..I...E.ER.N..E.LF.EII..NF.NLGK.LE..V.EANRTPNY.NV..RPSPRH.LV
Retrocopy
LEERNIEILQMEDERELRLKKHEEILQEISNSI--RNCNIRIISIPE/ERENGAENLFQEIIAKNFPNLGKELELHVNEANRTPNYNNV/KRPSPRHLLV


Parental protein
KLAKLVMKEYIMAEAARQKKITYKGSPIRLS
KL.K......I...AAR.KK.TYKG.PIRLS
Retrocopy
KLPKRNDRRKIL-RAARHKKVTYKGTPIRLS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide