RetrogeneDB ID:
retro_ecab_1001
Organism:
Horse ( Equus_caballus )
Location:
8:79540228-79540437 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary
Identity:
65.28 %
Coverage:
59.17 %
Frameshifts:
1
Stop codons:
0
Parental gene:
Parental gene symbol:
PSME1
Parental gene aliases:
No gene alias available
Parental gene description:
proteasome (prosome, macropain) activator subunit 1 (PA28 alpha) [Source:HGNC Symbol;Acc:9568]
Genomic region (view in browser)
>retro_ecab_1001
CCAATGAATGGCAAGAAGATGGTGGTCGTCCTGCAGCGTCTCAAGCCTGGAACTAGGCCT
GTCATTGAGCAGTCAGTCTGGTCACTATCTGGTTGCCGCTGCAGATACCTTGGCTTGAGG
ATGGGAACAGTTTTGGAATGGCTGTGCAGGAGACGGTGTTTGAGCTGATGACCACCCTGC
ACACCAAGCTGATAGGCTTCAATCTCCAA
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.06 |
| SRP021940_cerebellum | 0.0 |
| SRP021940_embryo | 0.1 |
| SRP021940_placental_villous | 0.04 |
| SRP021940_synovial_membrane | 0.05 |
| SRP021940_testis | 0.0 |
Parental protein coverage
Changes in the retrocopy sequence
