RetrogeneDB ID:
retro_ecab_1002
Organism:
Horse ( Equus_caballus )
Location:
8:82771271-82772398 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
86.54 %
Coverage:
81.78 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
ODC1
Parental gene aliases:
No gene alias available
Parental gene description:
ornithine decarboxylase 1 [Source:HGNC Symbol;Acc:8109]

Genomic region (view in browser)





>retro_ecab_1002
ATGATTAAGAAACACCTGAGGTGGTTAAAAGCTCTTCCTCGGGTCACCCCCTTTAACGCA
GTCAAATGCAATGATAGCAGAACCATCGTGAAGACCCTGGCTGACGTCGGGACAGGGTTT
GACTGTGCCAGCAAGACTGAAATACAACTGATGCTGAGTCTCAGGGTGCCTCCAGAGAGA
ATTATCTGCGCAAATCCTTGTAAACAAGTGTCCCAGGTTAGGTACGCTGCCAATAACGGA
GTCCAAATGATGACTTTTGATAGTGAGGTCGAGTTGATGAAAGTTGCCAGGGCACATCCA
AAGGCAGAGTTGGTTTTGCGGATTGCTACCAATGATTCCAAAGCAGTCCGTCGCCTCAGT
GTTAAATTTGGTGCCACACTCAAAACCAGCAGGCTTCTTTTGGAATGGGCTAAAGAGCTA
AATATTGACGTCATTCGTGTCAGCTCCCATGTGGGAAGTGGCTGCACTGACCCGGAGACC
TTTGTGCAGGCCATCTCTGATGCCCGCTGTGTCTTTGATATGGGGGCTGAAATTTGTTTC
AGCGTATATCAGCTTGATATTGGTGGTGGCTTTCCTGGATCTGAGGAGATAAGGCTTAAA
TTTGAAGAGGTCACCAGTGTAATCAACCCAGCACCAGACAAGTATTTTGCGTCAGACTCC
GGAGTGAGAGTCATAGCTGAGCCAGGCGGATACTATGTTGCATCAGCTTTCAGGCTCGCA
GTTAATATCATTGCGAAAAAACTCATATTAAAGGAACAAACAGGAGCTGATGATGATGAG
TCGAGTGAACAAACCTTTGTGTATTACGTGAATGATGGAGTATACGGATCATTTCATTGC
ATCCTTTATGATCATGCACACGTGAAGCCTCTTCTGCAAAAGAGATCCAAACCAGATAAG
TATATTCGTCCAGTATATGGGGACCGACCTGTGACAGCCTTGATTGCATTGTTGAGCGCT
GTAACTTGCCCCAGATGCAGGTGGGCGATTGGATGCTTTTTGAAAACATGGGTGCTTATA
CTGTTGCTGCTGCTTGTACTTTCAACGGATTCCAGAGGCCAGCTATCTACTATGTGATGT
TGGGGCCAACATGGCTCGACTTCCCACATGAAGTGCAGGAGCAGGAC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.06
SRP021940_cerebellum 0.05
SRP021940_embryo 0.07
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.12

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ILKKHLRWLKALPRVTPFYAVKCNDSRTIVKTLAAIGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTFDSEVELMKVARAHP
..KKHLRWLKALPRVTPF.AVKCNDSRTIVKTLA..GTGFDCASKTEIQL..SL.VPPERII.ANPCKQVSQ..YAANNGVQMMTFDSEVELMKVARAHP
Retrocopy
MIKKHLRWLKALPRVTPFNAVKCNDSRTIVKTLADVGTGFDCASKTEIQLMLSLRVPPERIICANPCKQVSQVRYAANNGVQMMTFDSEVELMKVARAHP


Parental protein
KAKLVLRIATDDSKAVCRLSVKFGATLKTSRLLLERAKELNIDVIGVSFHVGSGCTDPETFVQAISDARCVFDMGAEIGFNMYLLDIGGGFPGSEDVKLK
KA.LVLRIAT.DSKAV.RLSVKFGATLKTSRLLLE.AKELNIDVI.VS.HVGSGCTDPETFVQAISDARCVFDMGAEI.F..Y.LDIGGGFPGSE...LK
Retrocopy
KAELVLRIATNDSKAVRRLSVKFGATLKTSRLLLEWAKELNIDVIRVSSHVGSGCTDPETFVQAISDARCVFDMGAEICFSVYQLDIGGGFPGSEEIRLK


Parental protein
FEEVTSVINPALDKYFPSDSGVRVIAEPGRYYVASAFTLAVNIIAKKLVLKEQTGSDDEDESSEQTFMYYVNDGVYGSFNCILYDHAHVKPLLQKRPKPD
FEEVTSVINPA.DKYF.SDSGVRVIAEPG.YYVASAF.LAVNIIAKKL.LKEQTG.DD.DESSEQTF.YYVNDGVYGSF.CILYDHAHVKPLLQKR.KPD
Retrocopy
FEEVTSVINPAPDKYFASDSGVRVIAEPGGYYVASAFRLAVNIIAKKLILKEQTGADD-DESSEQTFVYYVNDGVYGSFHCILYDHAHVKPLLQKRSKPD


Parental protein
EKY-YSSSIWGPTCDGLDRIVERCNLPEMQVGDWMLFENMGAYTVAAASTFNGFQRPTIYYVMSGPTW-QLMQQIQNHD
.KY.YSSSIWGPTCD.LD.IVERCNLP.MQVGDWMLFENMGAYTVAAA.TFNGFQRP.IYYVM.GPTW.......Q..D
Retrocopy
-KY/YSSSIWGPTCDSLDCIVERCNLPQMQVGDWMLFENMGAYTVAAACTFNGFQRPAIYYVMLGPTWLDFPHEVQEQD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide